PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g01900.1.p
Common NameBRADI_5g01900, LOC100821879
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 302aa    MW: 33512.8 Da    PI: 4.5694
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g01900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.21.1e-1182127555
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       + + Er RR+r+N+++ +Lr ++P+      +K++Ka++ + A+ YI +Lq
  Bradi5g01900.1.p  82 NVILERDRRRRLNEKLYTLRGVVPNI-----TKMDKASVIQDAISYIEELQ 127
                       4578*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-1776144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.79677126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.46E-1478131No hitNo description
PfamPF000101.6E-982127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-1483132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-1583143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MDSDLDLSFD FSWQTPLFFD LDLGVVDSIY MPAAVEDMPL PAEDSLSGLY SCYDDSSSPD  60
GACNSSLTTT KTTATEGRVS KNVILERDRR RRLNEKLYTL RGVVPNITKM DKASVIQDAI  120
SYIEELQEQE RRLLAEISGL QVEPAAAIKA ESSFVSTGEV VEEEEEEDSP ARQRRRKMRR  180
TGSASPINDD ASFCFCSPAT RPVEILELQI TEVGEKMAVV SLRHGKKRRG DLTKVCKALE  240
SLHRLHVITA CITTISGNIV HTMFVEAEGM SGSQVIKEMV QAALGQFGTY EERSLEYMSY  300
Q*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172177QRRRKM
2172179QRRRKMRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g01900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3572946e-35AK357294.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1049P14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003580572.10.0transcription factor bHLH35
TrEMBLI1IVT70.0I1IVT7_BRADI; Uncharacterized protein
STRINGBRADI5G01900.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Representative plantOGRP27531332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.12e-39bHLH family protein