PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g05110.2.p
Common NameBRADI_5g05110, LOC100821159
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 271aa    MW: 29459.4 Da    PI: 4.5879
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g05110.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.35.5e-1377121655
                       HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +Er RR+++N+++  Lr+++P+      +K++Ka+i + A+eYI++Lq
  Bradi5g05110.2.p  77 ILMERDRRRKLNEKLYALRSVVPNI-----TKMDKASIIKDAIEYIQKLQ 121
                       579*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.99971120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.41E-1775133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.21E-1475125No hitNo description
PfamPF000101.1E-1076121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-1677132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-1577126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MESDMGDSFA YYWETQRYLE SEELVDSILA GATEDAMSYY DSSSPDGSHS SSAPAGAATM  60
APGAGTATGT GGANKNILME RDRRRKLNEK LYALRSVVPN ITKMDKASII KDAIEYIQKL  120
QAEERRMAAE VESEEYGGGG GVMEEQVCSA KKVKRALSVS SLNDALFTAP SPSPPVEVLE  180
VRVSEVGEKV LVVSVTCSKQ RDAMPKVCRL LEELRLRVIT ANITSVSGCL MHTLFIEVDD  240
MDRFQTKEMI EAALSQLDAI RSPTLSSMSY *
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g05110.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003579501.10.0transcription factor bHLH35
TrEMBLI1IWM50.0I1IWM5_BRADI; Uncharacterized protein
STRINGBRADI5G05110.20.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.15e-37bHLH family protein