PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g07300.1.p
Common NameBRADI_5g07300, LOC100827837
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 664aa    MW: 74553.9 Da    PI: 8.811
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g07300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.65.2e-07606648343
                       SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 
                       +W++   + lv+a k ++++   +W+++a+ ++ g+t  qck +
  Bradi5g07300.1.p 606 AWSEAQVLALVQALKAFPKDasqRWERVAAAVP-GKTVVQCKKK 648
                       8********************************.********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465654.45E-2093176IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1108.1E-2194199IPR001623DnaJ domain
SMARTSM002713.6E-1597172IPR001623DnaJ domain
CDDcd062573.39E-1398169IPR001623DnaJ domain
PROSITE profilePS5007618.15198180IPR001623DnaJ domain
PfamPF002266.3E-1898177IPR001623DnaJ domain
PRINTSPR006251.2E-8103121IPR001623DnaJ domain
PRINTSPR006251.2E-8121136IPR001623DnaJ domain
PRINTSPR006251.2E-8152172IPR001623DnaJ domain
PROSITE patternPS006360157176IPR018253DnaJ domain, conserved site
PROSITE profilePS500905.901464519IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.6E-4466511IPR009057Homeodomain-like
SuperFamilySSF466894.56E-7466512IPR009057Homeodomain-like
SMARTSM007177.2E-5468521IPR001005SANT/Myb domain
CDDcd001674.69E-4471511No hitNo description
PROSITE profilePS500906.144599648IPR017877Myb-like domain
SMARTSM007173.1E-5603655IPR001005SANT/Myb domain
SuperFamilySSF466891.57E-7604648IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.6E-4606648IPR009057Homeodomain-like
PfamPF002491.6E-5606648IPR001005SANT/Myb domain
CDDcd001674.28E-5606648No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 664 aa     Download sequence    Send to blast
MGSKRSCLLI TYSPEITDGI PLYVSSNCLP VKASKYEPAG HSFHAVALKL RGLDEKEDTE  60
TDDRSVSSDD KSQDFSAASD TFSSKGKKKS ASGSQQQDHY ALLGLGNLRF LATEDQIRKS  120
YRDMALKHHP DKQAALLLHE VTEEAKQAKK DEIESHFKAI QEAYEVLMDP TKRRIFDSTD  180
EFDDDIPTDC APQDFFKVFG PAFMRNGRWS VTQPIPSLGD DTTPVADVDQ FYNFWYNFKS  240
WREFPHEDEY DLEQAESREH KRWMERQNAK IQEKAKKVEY ARVRNLVDNA FKKDPRIQRR  300
KEEEKAEKQR RREAKYMAKR LQEEEAARAA EEERKRKEEE AKKAAEAALN QKKLREKEKK  360
LLRKEKSRLR ALMAPVVADN QFNLSQDDVE TACTSLDIEQ LKKLCDNMED KDTTEKARLL  420
RGALSKESSP NTSKEKIQAN GVEGSTPKPM PMGGKVPQGN ALSGYEKKER PWGKEEVEML  480
RKATQKYPKG TSRRWEVVSE FIGTGRSVEE ILKATKTVLL QKPDSAKAFD SFLEKRKPAP  540
SIVSPLSTRD ETVVLQAVGA GTEPSKAAAA EPAAAQPAAA SSQTANEKTG ADPVPDEAPS  600
ATDQDAWSEA QVLALVQALK AFPKDASQRW ERVAAAVPGK TVVQCKKKVA AMRSNFRTKK  660
GAE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A1e-1919429820124Zuotin
5dje_B1e-1919429820124Zuotin
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g07300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010239784.10.0dnaJ homolog subfamily C member 2
TrEMBLI1IWY00.0I1IWY0_BRADI; Uncharacterized protein
STRINGBRADI5G07300.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81193440
Representative plantOGRP38231521
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.10.0DnaJ domain ;Myb-like DNA-binding domain