PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi5g07675.1.p

Common Name

BRADI_5g07675

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

C2H2

Protein Properties

Length: 169aa MW: 18627.9 Da PI: 6.6205

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi5g07675.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.5	2.5e-05	52	75	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C +Cg +F++ ++H+ + H Bradi5g07675.1.p 52 FECDICGFTFRTVKAIRTHMLSsH 75 89******************9988 PP
2	zf-C2H2	17.6	1.1e-05	89	111	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C++Cgk F+++ L H +H Bradi5g07675.1.p 89 YICGHCGKQFRSWRALGGHRASH 111 89**************9999888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	3.6E-5	52	77	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.39	52	80	IPR007087	Zinc finger, C2H2
SMART	SM00355	3.3E-4	52	75	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	1.18E-8	52	111	No hit	No description
PROSITE pattern	PS00028	0	54	75	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	1.4E-4	87	115	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.655	89	116	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.2E-7	89	113	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.02	89	111	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	91	111	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MAATRYVPRL TLSSSSSSGA DDGDEPPRYY PWRVKSAHEL DEGIIDPLHT SFECDICGFT 60 FRTVKAIRTH MLSSHPDADQ VVPPPIRWYI CGHCGKQFRS WRALGGHRAS HRGKKGCSLL 120 SKQERAEDFP AMVAAAAGAM RAPPAVVRDF DLNKPAPEEE QEEEDPPP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi5g07675.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0Q3KQH7	1e-121	A0A0Q3KQH7_BRADI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP37257	2	3
Representative plant	OGRP11373	2	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45120.1	2e-07	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Bradi5g07675.1.p