PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g07720.1.p
Common NameBRADI_5g07720, LOC104585309
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 357aa    MW: 38905.3 Da    PI: 4.7419
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g07720.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.31e-11153197655
                       HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          Er+RR r+++++ eLr+l+P+      +K++Ka+i   AveY+k+Lq
  Bradi5g07720.1.p 153 IVSERKRRFRMKEKLYELRSLVPNI-----TKMDKASIIADAVEYVKNLQ 197
                       568*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.63E-17144215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.33E-15144198No hitNo description
PROSITE profilePS5088816.139147196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-17149212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-13153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-9153197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034756Biological Processregulation of iron ion transport
GO:0071281Biological Processcellular response to iron ion
GO:0071369Biological Processcellular response to ethylene stimulus
GO:0071732Biological Processcellular response to nitric oxide
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MEHHHHLQRH LSPTQTQEDL MISPDFFVDV DQLHFHDADV GGGSGGFEPV AATAGVVVDD  60
GAWMEDLMQL GDELFGENNE VVVDAMADDD DRLQYQLEAW YDDHQQQEDS PEQPCSYDDV  120
ISPGGSGDHQ GPVGDDNGDL SATRKRRDRS KTIVSERKRR FRMKEKLYEL RSLVPNITKM  180
DKASIIADAV EYVKNLQTHA RKLKEDVAAL EARPGLPGQL RRLQQQDRRR QAAGGGRGND  240
EGISSRSRGG GGGGARVTSV GAAQVGDGLF FVTVECERRD GVAAPLCAAV ESLACFRVQS  300
STLGCSSDRV VSTLTLKVSE AGEDMVISER TVKLWVLAAL LKEGFRPEAS TAEIIC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144159KRRDRSKTIVSERKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g07720.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8350402e-69CT835040.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA119K17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010239803.20.0transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR
TrEMBLI1IX090.0I1IX09_BRADI; Uncharacterized protein
STRINGBRADI5G07720.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55463057
Representative plantOGRP72711118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.18e-34FER-like regulator of iron uptake