PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g07925.1.p
Common NameBRADI_5g07925, LOC100825175
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 206aa    MW: 21824.8 Da    PI: 6.2665
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g07925.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.35e-121231784196
                       TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEE CS
                B3  41 esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkv 96 
                        +grsWe+++  ++++    l +GW++F+ +n L+ gD +vF+l+ g+ ++  + v+v
  Bradi5g07925.1.p 123 WQGRSWEMRF--TGGRPIQRLDAGWRSFAVDNALRLGDGCVFELVsGEgEGVVFQVQV 178
                       589*******..88888899***********************994554555555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.16E-1484181IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-1484181IPR015300DNA-binding pseudobarrel domain
CDDcd100171.13E-1285180No hitNo description
PROSITE profilePS5086312.04187182IPR003340B3 DNA binding domain
SMARTSM010190.00687182IPR003340B3 DNA binding domain
PfamPF023623.6E-9101174IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MAEAIPAESS TVTTPPLDLS HHSSQESGGI ADAGANDNAM PSPGAAGDSN QAAIAAGPPD  60
KPDPRPAKAR VEKMQPRILP LLGKPYFACV VCRSHIQPPF QVVVPRSLAP FLPPKPAPAT  120
LTWQGRSWEM RFTGGRPIQR LDAGWRSFAV DNALRLGDGC VFELVSGEGE GVVFQVQVLR  180
AEIPARIRER AGGYNSSSPI VIEEE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g07925.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014751250.11e-148B3 domain-containing protein Os04g0386900
SwissprotQ7XLP47e-67Y4869_ORYSJ; B3 domain-containing protein Os04g0386900
TrEMBLA0A0Q3H2F31e-146A0A0Q3H2F3_BRADI; Uncharacterized protein
STRINGEMT324151e-100(Aegilops tauschii)
STRINGMLOC_48372.11e-100(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89543545
Representative plantOGRP7665916
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]