PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g08062.1.p
Common NameBRADI_5g08062, LOC100826411
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MIKC_MADS
Protein Properties Length: 216aa    MW: 24450.3 Da    PI: 10.7443
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g08062.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.56.5e-171252242
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                      rie+ ++r + f kRr+g++KKAeEL vLC+a+v +i++ +
  Bradi5g08062.1.p 12 RIEDRRRRRICFRKRRAGLIKKAEELAVLCEADVGLIVVNP 52
                      8************************************9865 PP
2K-box17.22.1e-071221674287
             K-box  42 dLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 
                       ++++L++ +L q+e+++e++l++ +++K + lle+ +  ++  ++ 
  Bradi5g08062.1.p 122 NISQLTMDQLSQIERKVEDALRSTKARKGKALLEERDLIKRISEKE 167
                       5899******************************998777654443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.423355IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-18362IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-20585IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-15525IPR002100Transcription factor, MADS-box
PfamPF003196.0E-191256IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-152540IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-154061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MGRQRGRVVL RRIEDRRRRR ICFRKRRAGL IKKAEELAVL CEADVGLIVV NPFDRSFHCF  60
AAPATMENIM ARHQNFPAVK KRGHGRSILK HATKSRGKDF QLPRAITDRS LNIADMSIDE  120
SNISQLTMDQ LSQIERKVED ALRSTKARKG KALLEERDLI KRISEKEKKQ EGGMYGAGCQ  180
QSDEQVDVTL RLGFGIGYDI GCSHGHQKPI NLNMP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g08062.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4693471e-103KF469347.1 Brachypodium distachyon MADS-box transcription factor 53 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014751692.11e-157MADS-box transcription factor 51
TrEMBLA0A0Q3E3P61e-156A0A0Q3E3P6_BRADI; Uncharacterized protein
STRINGMLOC_36644.73e-54(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1621322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.17e-12AGAMOUS-like 8