PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g08167.3.p
Common NameBRADI_5g08167
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family CAMTA
Protein Properties Length: 1024aa    MW: 113959 Da    PI: 5.6271
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g08167.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1170.91.9e-53121282117
              CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenpt 93 
                       lke ++rwlk++e++ iL n+e+  +t+e++++p+sgsl+Lynr++ r+frkDGy w++kkdg+tv E+he+LKvg+ ++l+cyYah++enp 
  Bradi5g08167.3.p  12 LKEaRSRWLKPSEVYYILLNHERLPITHEPPNKPPSGSLFLYNRRVNRFFRKDGYAWRRKKDGRTVGEAHERLKVGNLDALSCYYAHGDENPC 104
                       56669**************************************************************************************** PP

              CG-1  94 fqrrcywlLeeelekivlvhylev 117
                       fqrrc+w+Le ++++ivlv+y+ev
  Bradi5g08167.3.p 105 FQRRCFWMLEPAYDHIVLVQYREV 128
                       **********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143777.3338134IPR005559CG-1 DNA-binding domain
SMARTSM010761.1E-6911129IPR005559CG-1 DNA-binding domain
PfamPF038597.5E-4614127IPR005559CG-1 DNA-binding domain
SuperFamilySSF812961.29E-15447530IPR014756Immunoglobulin E-set
PfamPF018332.7E-7448528IPR002909IPT domain
Gene3DG3DSA:2.60.40.101.6E-8448539IPR013783Immunoglobulin-like fold
CDDcd001021.25E-4448531No hitNo description
Gene3DG3DSA:1.25.40.202.0E-16642737IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484038.08E-16643738IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.99644736IPR020683Ankyrin repeat-containing domain
CDDcd002041.61E-10649736No hitNo description
PfamPF127963.0E-6660737IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008810.927677709IPR002110Ankyrin repeat
SMARTSM002482.4E-4677706IPR002110Ankyrin repeat
SMARTSM002483800716745IPR002110Ankyrin repeat
SMARTSM0001524797819IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.218798827IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.48856885IPR000048IQ motif, EF-hand binding site
SMARTSM000156.9857877IPR000048IQ motif, EF-hand binding site
PfamPF006120.0027858876IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525404.51E-7858903IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000153.4E-6878900IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.42879907IPR000048IQ motif, EF-hand binding site
PfamPF006123.3E-5880900IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1024 aa     Download sequence    Send to blast
MITKRFDINV LLKEARSRWL KPSEVYYILL NHERLPITHE PPNKPPSGSL FLYNRRVNRF  60
FRKDGYAWRR KKDGRTVGEA HERLKVGNLD ALSCYYAHGD ENPCFQRRCF WMLEPAYDHI  120
VLVQYREVAE GRNYSASVSN ESAGSLSALS YPNDIYGKQY HSSTSGSSES SESRHSYSNS  180
ITEVSSGSAN KMYNNHSGVL LSIPEFEQTT VIGAPELGQS SLEQSSEFCL TNKSGLKQAL  240
KKIGEHLGLA DNDDDDYIYI NQSQPLDFDT SIEAADRQGH HTSNSLGNVS GEKQANQIQA  300
GETQNGVSRG ILPSWGNVLQ SNSVSSASSA YMQSSEYQPP GGLDSSDLQL QLSAATRFLL  360
GPEDSIDSPS YNCIARDEGI NGIDTLSVHN SSLQSCLNPD WQSLTPITLE SNACGSEIFE  420
LLSDHCQFEP SSGLDTRLTL TQKQQFNIHE ISPEWAFCSE VTKVIITGDF LCDPSNSCWG  480
VMFGDNEVPV EIVQPGVLRC HTPLHSSGKL TLCITNGNRE VCSEVKDFEF RAKPTVSSFR  540
DLTQSSRSMK SSEELSLLAK FARMLLCENG SSAVLDGDPQ STQRPKLNMN EEHWQQLIDE  600
LNVGCENPLS MVDWIMEELL KSKLQQWLSL KLQGNDGTCS LSKHEQGIIH LISALGYEWA  660
LSSVLSAGVG INLRDSNGWT ALHWAAYFGR EKMVAALLAA GASAPAVTDP TAQDPVGKTA  720
AFLASKRGHM GLAGYLSEVS LTSYLLSLTI EESDISKGSA AIEAERAVES ISQRSAQLHG  780
GTEDELSLKD SLAAVRNAAQ AAARIQNAFR AFSFRKRQHK DARLKDEYGM TQEDIDELAA  840
ASRLYYQHHV SNGQFSDKAA VSIQKKYRGW KGRKNFLNMR RNVVKIQAHV RGHQVRKKYK  900
TFVSTVSVLE KVILRWRRKG HGLRGFRAEQ PAMIAAEEEE EEDDDDFDDD DDEAVKIFRR  960
QKVDESVKEA VSRVLSMVES PEARMQYRRM LEEFRQATID TGASDEATSR LNDDLLMGMD  1020
FMF*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g08167.3.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024311653.10.0calmodulin-binding transcription activator 4 isoform X2
SwissprotQ9FYG21e-165CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A0Q3E3A20.0A0A0Q3E3A2_BRADI; Uncharacterized protein
STRINGBRADI5G08167.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62383241
Representative plantOGRP5621565
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.11e-143Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]