PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g08471.1.p
Common NameBRADI_5g08471, LOC100844221
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 261aa    MW: 27522.8 Da    PI: 4.5713
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g08471.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.5e-184090155
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      ++y GVr+++ +gr++AeIrdp +   + r++lg+f+taeeAa a+++a+++l+g
  Bradi5g08471.1.p 40 TRYLGVRRRP-WGRYAAEIRDPAT---KDRHWLGTFDTAEEAAVAYDRAARSLRG 90
                      5799******.**********843...4*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.02E-294099No hitNo description
SuperFamilySSF541717.19E-214198IPR016177DNA-binding domain
PROSITE profilePS5103221.5354198IPR001471AP2/ERF domain
PfamPF008479.1E-114190IPR001471AP2/ERF domain
SMARTSM003803.7E-3341104IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-284198IPR001471AP2/ERF domain
PRINTSPR003671.9E-84253IPR001471AP2/ERF domain
PRINTSPR003671.9E-86480IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MNFSSYFFSS SSSSSSSSEK KSSSSSKRRQ QQQQPDANPT RYLGVRRRPW GRYAAEIRDP  60
ATKDRHWLGT FDTAEEAAVA YDRAARSLRG VRARTNFAYP DLPPGSSVTP YLSPDLTAAD  120
NGSVHDLLQP FYADPSAALK PTHGQSAPAA ADIGNEYLYG GAPDMSALMD DIAMPDDLPV  180
DSMDFSSSMY GGGNNGGGGG WCEASEFVGY SASAASGGGG HGVYFEEGYV HSPLFSPMPA  240
ADDAGADGFQ LGGSASSYYY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-184297662ATERF1
3gcc_A9e-184297662ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g08471.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7282752e-84KJ728275.1 Zea mays clone pUT6553 AP2-EREBP transcription factor (EREB125) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003579639.10.0ethylene-responsive transcription factor LEP
TrEMBLA0A0Q3I8A00.0A0A0Q3I8A0_BRADI; Uncharacterized protein
STRINGTraes_2BL_5DC21F3CD.11e-112(Triticum aestivum)
STRINGTraes_2BL_970693C1F.11e-112(Triticum aestivum)
STRINGTraes_2BL_E7871AFBA.11e-112(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18853397
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.14e-31ERF family protein