PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g08600.1.p
Common NameBRADI_5g08600, LOC100846665
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Trihelix
Protein Properties Length: 327aa    MW: 35241.3 Da    PI: 6.5795
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g08600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix82.94.1e-261899173
          trihelix  1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73
                      rWt+qe+l+Lie++r +e r r +          ++ ++W++v++++r++g+er+p+qC+++w+nl+++ykki+e+e++   
  Bradi5g08600.1.p 18 RWTRQEILVLIEGKRVVEARGRGRGgrgagglagAEPTKWAAVAEYCRRHGVERGPVQCRKRWSNLAGDYKKIREWERSLLL 99
                      8******************999532245566666*******************************************99744 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.7E-111895No hitNo description
Gene3DG3DSA:1.10.10.606.5E-51883IPR009057Homeodomain-like
PROSITE profilePS500906.5281884IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MSGAGEGSGG GRAARLPRWT RQEILVLIEG KRVVEARGRG RGGRGAGGLA GAEPTKWAAV  60
AEYCRRHGVE RGPVQCRKRW SNLAGDYKKI REWERSLLLP SGGKEVSFWA MRNDARRERR  120
LPGFFDREVY DIIEGRGGSR NAAAQAQVVV VEEEGKEKPA QALNSGRGVP EEGLFTSSSA  180
SSEDDDDEAS VAPPAPVLPS PSPSPAPAHA VVAVTVPDKK NEAPVQDSSE KATSKGKQQE  240
QIMDDPPPEQ GGQKRQRSDD TTGEATDLQG QLIEILDQSS RMVAAQLEAQ NINCQLDREQ  300
RKDQVSSLLS VLGKVADALY RIADKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g08600.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3622981e-120AK362298.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2004B10.
GenBankAK3677351e-120AK367735.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2061F21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010239837.10.0trihelix transcription factor ASR3 isoform X2
TrEMBLI1IX910.0I1IX91_BRADI; Uncharacterized protein
STRINGBRADI5G08600.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.11e-46Trihelix family protein