PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g08600.3.p
Common NameBRADI_5g08600
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Trihelix
Protein Properties Length: 232aa    MW: 24761.8 Da    PI: 10.0952
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g08600.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix83.92e-261899173
          trihelix  1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73
                      rWt+qe+l+Lie++r +e r r +          ++ ++W++v++++r++g+er+p+qC+++w+nl+++ykki+e+e++   
  Bradi5g08600.3.p 18 RWTRQEILVLIEGKRVVEARGRGRGgrgagglagAEPTKWAAVAEYCRRHGVERGPVQCRKRWSNLAGDYKKIREWERSLLL 99
                      8******************999532245566666*******************************************99744 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-51883IPR009057Homeodomain-like
PfamPF138373.8E-111895No hitNo description
PROSITE profilePS500906.5281884IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MSGAGEGSGG GRAARLPRWT RQEILVLIEG KRVVEARGRG RGGRGAGGLA GAEPTKWAAV  60
AEYCRRHGVE RGPVQCRKRW SNLAGDYKKI REWERSLLLP SGGKEVSFWA MRNDARRERR  120
LPGFFDREVY DIIEGRGGSR NAAAQAQVVV VEEEGKEKPA QALNSGRGVP EEGLFTSSSA  180
SSEDDDDEAS VAPPAPVLPS PSPSPAPAHA VVAVTVPGER AAARFLHAKN F*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g08600.3.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3622981e-120AK362298.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2004B10.
GenBankAK3677351e-120AK367735.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2061F21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003579647.19e-90trihelix transcription factor ASR3 isoform X1
RefseqXP_010239837.19e-90trihelix transcription factor ASR3 isoform X2
SwissprotQ8VZ203e-52ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBLA0A0Q3I8E01e-162A0A0Q3I8E0_BRADI; Uncharacterized protein
STRINGBRADI5G08600.13e-89(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.18e-47Trihelix family protein
Publications ? help Back to Top
  1. Vidal EA, et al.
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
    BMC Genomics, 2013. 14: p. 701
    [PMID:24119003]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]