PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi5g09140.2.p

Common Name

BRADI_5g09140, LOC100830477

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

S1Fa-like

Protein Properties

Length: 81aa MW: 8835.54 Da PI: 10.4802

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi5g09140.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	135.3	1.4e-42	11	80	2	70
S1FA 2 avakvea.kGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 +v ++ea kGlnPG+ivllvv+++ll+f+vgny+ly yaqk+lPP+kkkPvskkklkreklkqGv++PGe Bradi5g09140.2.p 11 NVIIEEAnKGLNPGMIVLLVVATFLLLFFVGNYALYLYAQKTLPPKKKKPVSKKKLKREKLKQGVSAPGE 80 55677888*************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD019013	2.0E-7	12	80	No hit	No description
Pfam	PF04689	1.1E-39	16	80	IPR006779	DNA binding protein S1FA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 81 aa Download sequence Send to blast
MAEQFGDSAN NVIIEEANKG LNPGMIVLLV VATFLLLFFV GNYALYLYAQ KTLPPKKKKP 60 VSKKKLKREK LKQGVSAPGE *

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi5g09140.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK249022	8e-93	AK249022.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf15n14, mRNA sequence.
GenBank	AK251638	8e-93	AK251638.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf126m03, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010239871.2	1e-50	DNA-binding protein S1FA
Swissprot	Q7XLX6	1e-32	S1FA2_ORYSJ; DNA-binding protein S1FA2
TrEMBL	I1IXF5	3e-49	I1IXF5_BRADI; Uncharacterized protein
STRING	BRADI5G09140.1	5e-50	(Brachypodium distachyon)

Link Out ? help Back to Top
Phytozome	Bradi5g09140.2.p
Entrez Gene	100830477

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]