PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g10470.1.p
Common NameBRADI_5g10470, LOC100836297
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ZF-HD
Protein Properties Length: 286aa    MW: 29311.8 Da    PI: 8.1063
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g10470.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer85.46.2e-272270558
       ZF-HD_dimer  5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                      +YkeC++NhAa++Gg+a+DGCgE+m++     ++++l CaACgCHR+FHRr+ +
  Bradi5g10470.1.p 22 KYKECMRNHAAAMGGQAFDGCGEYMSA-----SPDSLSCAACGCHRSFHRRQAA 70
                      8*************************9.....799****************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257743.0E-192267IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047709.9E-222268IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.2E-242268IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.6262368IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.22E-17151222IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-26157223IPR009057Homeodomain-like
TIGRFAMsTIGR015652.8E-25164220IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MMDQLSLVPY EGGSGVGGAG GKYKECMRNH AAAMGGQAFD GCGEYMSASP DSLSCAACGC  60
HRSFHRRQAA GGSLTGSPVF FRPPPPPPHT HHGVLQGFLA SAPPPPPQLA LPYHAVPTAA  120
WHHGLGLDPA HTARAGSETP PRAEDCSPGS GSGGPGAGAG MFGRKRVRTK FTPEQKEQMR  180
AFAEKQGWRI NRDDGGALDR FCLEIGVKRN VLKVWMHNHK THLASPTFRS SAAAVAAAAG  240
INPVAGAGPG IGITGVGTGD GDDEDTDDSP PRAAVSSPSP SPISV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-201652201873ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g10470.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3731512e-68AK373151.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3022I13.
GenBankAK3744862e-68AK374486.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3066K06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003579781.10.0zinc-finger homeodomain protein 8
SwissprotQ7X7N35e-81ZHD8_ORYSJ; Zinc-finger homeodomain protein 8
TrEMBLI1IXW00.0I1IXW0_BRADI; Uncharacterized protein
STRINGBRADI5G10470.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136492225
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.18e-41zinc finger homeodomain 1