PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g11070.1.p
Common NameBRADI_5g11070, LOC100829165
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Trihelix
Protein Properties Length: 419aa    MW: 45344.9 Da    PI: 7.5583
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g11070.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix39.51.4e-1277158286
          trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                       W++  + aLi+a  e+  +l+rg+l+ p+W+ev++ +    +  +  +s +qCk++++ l+k+yk +++   +       +++++d+l+
  Bradi5g11070.1.p  77 WSEGATSALIDAWGERFVALGRGSLRHPQWQEVADSVsareSYSKAAKSDIQCKNRIDTLKKKYKIERAKPVS-------SWQFYDRLD 158
                       *************************************74433344567999**************99887765.......589998886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.3E-2275159No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010468Biological Processregulation of gene expression
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MDDDDVHGDV SPSPTPSPTS SSPLPVASAL PVADPVTVAS APPGGGLMTL ALPIQKHGVY  60
PSHGGGGGGG GGREDAWSEG ATSALIDAWG ERFVALGRGS LRHPQWQEVA DSVSARESYS  120
KAAKSDIQCK NRIDTLKKKY KIERAKPVSS WQFYDRLDVL LAPTYNQKPS AHPNGRNPVP  180
TALRAGFPKR SRTPLMPAAA PVKQRAPSPE PSASSESSDG FPPEPVLPVA NGKRRRTDEG  240
RGDGSSGNDR VQGLRELAQA IRRFGEAYER METAKLEQAT EMERRRLDFA RELESQRVQF  300
FLNTQRELSQ AKKHNSLAAA ASLAGATIVG GSSRRIASIP DPTSRRKTSV PTVRTSSNHH  360
GRYHISESSR HQHHQHRPAP RPHYQYHDNN FAASAAANDG EQSDDEEEED EGDEEESQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g11070.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010239949.10.0trihelix transcription factor ASIL2
SwissprotQ9LJG85e-36ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLI1IY380.0I1IY38_BRADI; Uncharacterized protein
STRINGBRADI5G11070.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24043069
Representative plantOGRP4871684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11100.19e-40sequence-specific DNA binding transcription factors