PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g11180.1.p
Common NameLOC100830698
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 148aa    MW: 15594.4 Da    PI: 8.0935
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g11180.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000133557123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      + C +C++ F+++  L  H++ H
  Bradi5g11180.1.p 35 FACCYCPRKFRSSQALGGHQNAH 57
                      78******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.49E-53461No hitNo description
PROSITE profilePS5015710.0343562IPR007087Zinc finger, C2H2
PROSITE patternPS0002803757IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MDMGMGMGME REEGLNLSLS LQQSPTSPPR FQAVFACCYC PRKFRSSQAL GGHQNAHKLQ  60
RNLARRGREA TTALSLAVPP GDQQAGKAAG ADDPPRPADP DEAWRGDGGR IHRHRLQGTG  120
SGAASSGGAG RGNEELADEM IDLSLKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g11180.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9704076e-55EU970407.1 Zea mays clone 344595 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003581274.21e-103uncharacterized protein LOC100830698
TrEMBLI1IY491e-102I1IY49_BRADI; Uncharacterized protein
STRINGBRADI5G11180.11e-103(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69922646
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.16e-14zinc finger protein 2