PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g11295.1.p
Common NameBRADI_5g11295, LOC100831921
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 193aa    MW: 21112.4 Da    PI: 4.7228
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g11295.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2575e-181969155
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      s+y+GVr +k +g+Wv+eIr p   g ++r++lg+f +ae+Aa a++ a+++l+g
  Bradi5g11295.1.p 19 SQYRGVRKRK-WGKWVSEIRQP---GTKTRIWLGSFESAEMAAVAHDVAALRLRG 69
                      78*****999.**********8...325*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.08E-201979IPR016177DNA-binding domain
CDDcd000182.18E-281978No hitNo description
PfamPF008472.0E-111969IPR001471AP2/ERF domain
PROSITE profilePS5103223.4852078IPR001471AP2/ERF domain
SMARTSM003803.5E-352084IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.5E-302078IPR001471AP2/ERF domain
PRINTSPR003676.5E-102132IPR001471AP2/ERF domain
PRINTSPR003676.5E-104359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MEESSGKAQP PNNASVSQSQ YRGVRKRKWG KWVSEIRQPG TKTRIWLGSF ESAEMAAVAH  60
DVAALRLRGR DSAQLNFPGS VGRLPRPASS HPDDVRAAAA EAAELVRCEP ALVARREYEW  120
GSQDQEASRV EEVQVGGTRG SDEEFEVDSP RLWAEMAEAM LLDPPAWATA GASCEMDQAA  180
YCWSQGSLWD AY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-151981163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-151981466ATERF1
3gcc_A2e-151981466ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g11295.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9581351e-81EU958135.1 Zea mays clone 1674836 dehydration-responsive element-binding protein 1D mRNA, complete cds.
GenBankEU9581601e-81EU958160.1 Zea mays clone 1675695 dehydration-responsive element-binding protein 1D mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003581277.11e-137ethylene-responsive transcription factor ERF027
SwissprotQ9C9I22e-33ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A0Q3E8Z81e-136A0A0Q3E8Z8_BRADI; Uncharacterized protein
STRINGTRIUR3_32168-P12e-69(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22443389
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.12e-26ERF family protein