PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi5g11516.1.p

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

FAR1

Protein Properties

Length: 195aa MW: 22296.8 Da PI: 10.7478

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi5g11516.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	56	1.4e-17	34	115	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 kfYn+YAk++GF +++s+ ++ +++ +C++egk +++ ++ +++r ra +++gCka++ +k + dg +++++ eHnH+l+ Bradi5g11516.1.p 34 KFYNAYAKHTGFGLKRSQRNT-------YRSYIRCTREGKYTTSVRD-GERQRDRARKKIGCKAHMGLKVNGDGGCIIKSMHFEHNHQLS 115 6***********9987444.......68889********99.99999*********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.0E-13	34	115	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MKKNIAKNMQ APELPKNLIP IVGQHFSTFD EAFKFYNAYA KHTGFGLKRS QRNTYRSYIR 60 CTREGKYTTS VRDGERQRDR ARKKIGCKAH MGLKVNGDGG CIIKSMHFEH NHQLSLSLSM 120 LVLLHSHKRV NPTLQDYIKD LQLSNVKHVN IMSLLTRLSG GRDKLGCHNR DVLNMKAKNT 180 RKESADDVQI LFKL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi5g11516.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014757782.1	3e-61	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A2K2CGN8	1e-142	A0A2K2CGN8_BRADI; Uncharacterized protein
STRING	BRADI1G47460.1	1e-114	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7609	10	43
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-12	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Bradi5g11516.1.p