PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g12127.1.p
Common NameBRADI_5g12127, LOC100843739
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family EIL
Protein Properties Length: 468aa    MW: 51146 Da    PI: 6.0769
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g12127.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3348.71.2e-106653572290
                       XXXXXXXXXXXXXXXXXXXXXX.....XXXXX.......XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
              EIN3   2 elkkrmwkdqmllkrlkerkkq...lledkeaa......tgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpve 85 
                       +lkkrmwkdqmll++l++ +     + +++ +a        +k s++++ ++rrk+m raQDg+L++Ml++me+cna+GfvYgi++e g pv+
  Bradi5g12127.1.p  65 DLKKRMWKDQMLLMKLEGSSGGhdrRAGAQRPAagshlaQAQKDSETPESRYRRKAMLRAQDGVLRHMLRMMEACNARGFVYGIVDEAGVPVS 157
                       8***************9987651113444444478887444445568999******************************************* PP

                       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S-- CS
              EIN3  86 gasdsLraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGke 178
                       g+sdsLr+WWke+v f+r gp  ++           ++++  ++ss  h l ++qD+tlgSLLsal+qhc+ppqr+fpl++g++pPWWPtG+e
  Bradi5g12127.1.p 158 GSSDSLRGWWKEDVGFERSGPLSLVGPG-------TAHGSP-ASSSFLHGLLDIQDSTLGSLLSALIQHCEPPQRSFPLDRGLPPPWWPTGQE 242
                       ***********************99983.......233333.3799*********************************************** PP

                       HHHHHHT.--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXXXX..XXX CS
              EIN3 179 lwwgelg.lskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsahss..slr 268
                        wwg +g  +++qg+ppy+kphdlkkawk+s+L+avikh+ p+++++r+l++qsk+lq++msa++  ++++v+ qee++ ++v+ + +   l 
  Bradi5g12127.1.p 243 VWWGLQGeSQAHQGPPPYRKPHDLKKAWKISLLSAVIKHLTPRFDQMRRLVWQSKRLQHRMSARDAETWSRVITQEEALDRQVQRSLQitPLD 335
                       *******8888888*********************************************************************9995545777 PP

                       XXXXXXXXXXXXXXXXXXXXXX CS
              EIN3 269 kqspkvtlsceqkedvegkkes 290
                       +++++  + ++  e v+g +  
  Bradi5g12127.1.p 336 EDDKDSAVGDGPREAVRGMHVD 357
                       7777777777766666643333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048734.3E-11165319No hitNo description
Gene3DG3DSA:1.10.3180.102.2E-62194328IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167683.53E-55197321IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MASPNVSDDE NSAPTLQELP RPAMDRGKAK AARHAAAIAA DAEPDQNEEL FSESESGSES  60
IEIADLKKRM WKDQMLLMKL EGSSGGHDRR AGAQRPAAGS HLAQAQKDSE TPESRYRRKA  120
MLRAQDGVLR HMLRMMEACN ARGFVYGIVD EAGVPVSGSS DSLRGWWKED VGFERSGPLS  180
LVGPGTAHGS PASSSFLHGL LDIQDSTLGS LLSALIQHCE PPQRSFPLDR GLPPPWWPTG  240
QEVWWGLQGE SQAHQGPPPY RKPHDLKKAW KISLLSAVIK HLTPRFDQMR RLVWQSKRLQ  300
HRMSARDAET WSRVITQEEA LDRQVQRSLQ ITPLDEDDKD SAVGDGPREA VRGMHVDKRK  360
RQVVGNESAG GNLDTGVGAE PLATLSGIDG VAEADRNSID ELMKMYYSCL QGTDGGEQDT  420
KDVVAVGRGG GEQSNTPAEN APLDADQGAC RYAASRFPER RRCDGHE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A4e-481983254130Protein ETHYLENE INSENSITIVE 3
4zds_B4e-481983254130Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g12127.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024311314.10.0ETHYLENE INSENSITIVE 3-like 5 protein
SwissprotQ9FJQ57e-87EIL5_ARATH; ETHYLENE INSENSITIVE 3-like 5 protein
SwissprotQ9LX165e-87EIL4_ARATH; Putative ETHYLENE INSENSITIVE 3-like 4 protein
TrEMBLA0A0Q3I9Y70.0A0A0Q3I9Y7_BRADI; Uncharacterized protein
STRINGBRADI5G12127.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63838168
Representative plantOGRP5631682
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10120.14e-88EIL family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Jeong HJ,Choi JY,Shin HY,Bae JM,Shin JS
    Seed-specific expression of seven Arabidopsis promoters.
    Gene, 2014. 553(1): p. 17-23
    [PMID:25261846]