PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g12437.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MIKC_MADS
Protein Properties Length: 239aa    MW: 27378.1 Da    PI: 9.0256
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g12437.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.82.9e-281059251
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      ri+n++ rqvtfskRrngi+KKA+EL +LCdaev ++ifsstg+lyeyss
  Bradi5g12437.1.p 10 RIDNSTSRQVTFSKRRNGIFKKAKELGILCDAEVGLVIFSSTGRLYEYSS 59
                      8***********************************************96 PP
2K-box89.65.7e-3076170498
             K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                       ++ + + +++ + +q+e+a L+++++nLq+++R+l+G+dL+ L +keLq Le+qLe sl+ iR+kK++ll+++i+el +k   +++en +L k
  Bradi5g12437.1.p  76 QQPVTNPNSELKFWQREAASLRQQLHNLQENHRQLMGQDLSGLGVKELQTLENQLELSLRCIRTKKDQLLIDEIHELNRKGSLVHQENVELYK 168
                       55666889999*********************************************************************************9 PP

             K-box  97 kl 98 
                       k+
  Bradi5g12437.1.p 169 KV 170
                       97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.8E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.497161IPR002100Transcription factor, MADS-box
CDDcd002653.05E-44277No hitNo description
SuperFamilySSF554557.98E-33291IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-27323IPR002100Transcription factor, MADS-box
PfamPF003193.4E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-273859IPR002100Transcription factor, MADS-box
PfamPF014863.4E-2882170IPR002487Transcription factor, K-box
PROSITE profilePS5129715.58786176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010440Biological Processstomatal lineage progression
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MGRGKIVIRR IDNSTSRQVT FSKRRNGIFK KAKELGILCD AEVGLVIFSS TGRLYEYSSS  60
SMKSVIDRYG RAKEEQQPVT NPNSELKFWQ REAASLRQQL HNLQENHRQL MGQDLSGLGV  120
KELQTLENQL ELSLRCIRTK KDQLLIDEIH ELNRKGSLVH QENVELYKKV NLIRQENVEL  180
YKKLSETEAA NEVNQDSRPP YNFVEDANVH VHLELNLPQP QNSIEHTAPP KLGLQLNP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-20183183MEF2C
5f28_B2e-20183183MEF2C
5f28_C2e-20183183MEF2C
5f28_D2e-20183183MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00410DAPTransfer from AT3G57230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g12437.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3707320.0AK370732.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2116B15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003579908.11e-175MADS-box transcription factor 27 isoform X2
SwissprotQ6EP491e-138MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A0Q3E5K41e-174A0A0Q3E5K4_BRADI; Uncharacterized protein
STRINGOB04G22330.11e-149(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61435130
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.11e-103AGAMOUS-like 16
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]