PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi5g13300.1.p

Common Name

BRADI_5g13300

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

NAC

Protein Properties

Length: 223aa MW: 24338.6 Da PI: 9.1809

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi5g13300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	42.1	2.7e-13	7	143	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.pk...kvkaeekew.yfFskrdkkyatgkrknratksgyWkatgkd 89 pG+ F+P+ elv ++L +k+ g+++ v + vd++++ P L p + k++ + w yfF+++ + a+ g W g Bradi5g13300.1.p 7 RPGYVFRPKALELVEHFLVPKALGRDVLPGFVAEGVDVFSASPDALlPFssnHRKGHGEVWgYFFAPQPAGE-----GAVAAPGGCWLPYGPV 94 79**********************5554678999*****955434333445567899999987643.....3456789***** PP NAM 90 kevlskkgelvglkktLvfy..........kgrapkgektdWvmheyrl 128 k+ +ge+v ++ ++++ g + +t W+m eyrl Bradi5g13300.1.p 95 KAYRGGDGEAVAFRQRFAYHmvrltmrevcGGGRGAWAQTLWLMTEYRL 143 999***********7777665544244444579******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.1E-20	4	172	IPR003441	NAC domain
PROSITE profile	PS51005	20.317	6	172	IPR003441	NAC domain
Pfam	PF02365	4.0E-11	8	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MAVRNLRPGY VFRPKALELV EHFLVPKALG RDVLPGFVAE GVDVFSASPD ALLPFSSNHR 60 KGHGEVWGYF FAPQPAGEGA VAAPGGCWLP YGPVKAYRGG DGEAVAFRQR FAYHMVRLTM 120 REVCGGGRGA WAQTLWLMTE YRLNKGAAAF RNAQPGDHKV NMDCVVRKVF TKSEVAPPQP 180 LPSPARSSDE ESTCSNYASA DEEAGYSGQE QARKRARFRP CF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi5g13300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024311977.1	1e-161	NAC domain-containing protein 67
TrEMBL	A0A0Q3P337	1e-162	A0A0Q3P337_BRADI; Uncharacterized protein
STRING	BRADI5G13300.1	1e-160	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12891	22	31
Representative plant	OGRP13166	3	5

Link Out ? help Back to Top
Phytozome	Bradi5g13300.1.p