PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g13816.1.p
Common NameBRADI_5g13816, LOC100841810
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 310aa    MW: 35434.1 Da    PI: 6.9246
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g13816.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.92.1e-49141422128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                        pGfrF+Ptdeel+++yL++kv+++++ +  +i evdi+k+ePw+Lp+k+k    + +ewyf+ ++d+ky+ ++r+n atk+g+Wk tgkdke
  Bradi5g13816.1.p  14 DPGFRFQPTDEELISFYLNQKVKDRSFCT-IAIGEVDINKCEPWELPMKAKMsgpGATEWYFYYHKDRKYPMSHRTNHATKAGFWKITGKDKE 105
                       69************************888.78***************64444335777*********************************** PP

               NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +++++g l+g+kkt vfy grap+g+kt+Wvmheyr+
  Bradi5g13816.1.p 106 IFHRHGLLIGMKKTPVFYMGRAPNGKKTNWVMHEYRI 142
                       ***********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.19E-527177IPR003441NAC domain
PROSITE profilePS5100552.02313177IPR003441NAC domain
PfamPF023651.4E-2415142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MGDHLHQQQH LDLDPGFRFQ PTDEELISFY LNQKVKDRSF CTIAIGEVDI NKCEPWELPM  60
KAKMSGPGAT EWYFYYHKDR KYPMSHRTNH ATKAGFWKIT GKDKEIFHRH GLLIGMKKTP  120
VFYMGRAPNG KKTNWVMHEY RIISNNDKMP SYSTNNTITD QSSNSKDEWV VCRIFEKSIG  180
INEVVVSSYP MVPMNNNQIM APMAMTIRDQ QQGFDTNTTP CTQIVQPPSL MDPASSMYHL  240
YDNIGSSSLA PLSTNDNLYF ANNQTPPMSL YQHHMQTPTQ LGATTDEGFL GIDTWDIVHG  300
VMGPQYHHQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-4421771165NO APICAL MERISTEM PROTEIN
1ut4_B9e-4421771165NO APICAL MERISTEM PROTEIN
1ut7_A9e-4421771165NO APICAL MERISTEM PROTEIN
1ut7_B9e-4421771165NO APICAL MERISTEM PROTEIN
4dul_A9e-4421771165NAC domain-containing protein 19
4dul_B9e-4421771165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g13816.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003581365.10.0NAC domain-containing protein 92
SwissprotQ9FLJ25e-64NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A0Q3KSU20.0A0A0Q3KSU2_BRADI; Uncharacterized protein
STRINGTraes_7AL_38B48B7B2.22e-80(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145237121
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.14e-64NAC domain containing protein 58
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]