PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g13900.1.p
Common NameBRADI_5g13900, LOC100829253
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Trihelix
Protein Properties Length: 380aa    MW: 41397.3 Da    PI: 6.282
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g13900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix87.21.9e-2749136286
          trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.t..sessstcpyfdqle 86 
                       W ++e+l Li++rrem+++++++k++k+lWe++s+kmr++gf rsp++C++kw+nl k++kk + ++++  +   +   +++y+++++
  Bradi5g13900.1.p  49 WVQDETLSLIALRREMDNHFNTSKSNKHLWEAISAKMRDQGFDRSPTMCTDKWRNLLKEFKKARSHARSSgAagGNGAAKMAYYKEID 136
                       ****************************************************************999986322234456777777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.38641105IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.2E-442109IPR009057Homeodomain-like
SMARTSM007175.2E-545107IPR001005SANT/Myb domain
CDDcd122034.43E-2947112No hitNo description
PfamPF138376.4E-1948138No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MLLSGPQPTP PLLLPESSGE DGGGGAHDLD SSSRGGGAAS APKKRAETWV QDETLSLIAL  60
RREMDNHFNT SKSNKHLWEA ISAKMRDQGF DRSPTMCTDK WRNLLKEFKK ARSHARSSGA  120
AGGNGAAKMA YYKEIDDLLK RRGKAAGPAA GAGGGGGAPK SPTPTSKIES FLQFADKGFE  180
DANIPFGPVE ANGRSLLGVD DRLEPDRHPL ALTTADAVVA SGVNPWNWRD TSTNGGDNQA  240
TFGGRVILVK WGDYTKRIGI DGTAEAIKEA IKAAFGLRTK RAFWLEDEDE VVRSLDRDMP  300
IGTYALHLDD GIPIKLCTDA DRMTVRTEDK TFYTEDDFRD FLSRQGWTLL REYSGYRVVD  360
TLDDLRPGVI YQGMRSLID*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A2e-4243134186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00004PBMTransfer from 920224Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g13900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3539430.0AK353943.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1003P04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003580010.10.0trihelix transcription factor GT-1
SwissprotQ9FX531e-153TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBLI1IZ150.0I1IZ15_BRADI; Uncharacterized protein
STRINGBRADI5G13900.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56313752
Representative plantOGRP59331318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.11e-131Trihelix family protein
Publications ? help Back to Top
  1. Le Gourrierec J,Li YF,Zhou DX
    Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex.
    Plant J., 1999. 18(6): p. 663-8
    [PMID:10417717]