PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g14736.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 243aa    MW: 26343.5 Da    PI: 7.7982
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g14736.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM38.14.8e-12121502128
               NAM   2 ppGfrF.hPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk.....kvkaeekew.yfFskrdkkyatgkrknratksgyW 83 
                       ppG  F +P+  +++++yL++k+ +      ++  +v + vd++++ P+ Lp      +++ + + w yfF+ r           r +  g W
  Bradi5g14736.1.p  12 PPGHAFtKPNGRQIITQYLAPKALHGGrgtfFPG-HVAEGVDVFSASPEALPFhpscnRTRPNGDVWgYFFAARPAG------DARPVPGGCW 97 
                       78999956**************887775654444.678999**********95466544444566889999998774......4688899*** PP

               NAM  84 katgkdkevlsk..kgelvglkktLvfy......kgrapkgektdWvmheyrl 128
                          g dk   +    +++v  ++ ++f+      +gr   ++ t W+m+eyrl
  Bradi5g14736.1.p  98 VRYGLDKGYGHGgdPQAAVAFRRRFAFHvtwlrgDGRGVASVPTPWLMKEYRL 150
                       ********9997555566**********99998779999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-184177IPR003441NAC domain
PfamPF023652.1E-912150IPR003441NAC domain
PROSITE profilePS5100518.60612177IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MASTAVRTPQ PPPGHAFTKP NGRQIITQYL APKALHGGRG TFFPGHVAEG VDVFSASPEA  60
LPFHPSCNRT RPNGDVWGYF FAARPAGDAR PVPGGCWVRY GLDKGYGHGG DPQAAVAFRR  120
RFAFHVTWLR GDGRGVASVP TPWLMKEYRL NKGAAAFRAG PWAAASMDCV VCKVFRTPVV  180
HPPPPTPSVS DDDEEVLPDS GCPSEDEEEA DDYYSSDEDQ ERKRVGCSIE GRARKRARFG  240
CD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g14736.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010227184.11e-129uncharacterized protein LOC104581393
TrEMBLA0A0Q3H5571e-176A0A0Q3H557_BRADI; Uncharacterized protein
STRINGBRADI5G14740.11e-179(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128912231
Representative plantOGRP1316635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.13e-07NAC family protein