PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g14952.2.p
Common NameBRADI_5g14950
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 185aa    MW: 21503.4 Da    PI: 10.7019
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g14952.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM44.83.9e-14118456128
               NAM  56 kew..yfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ke   +fF++++ k + ++    at +gyW+  g+  +v +  g+++  k+ + fy+gr p+g +t W m ey+l
  Bradi5g14952.2.p  11 KERlgFFFAREEDKGTYSNGCYHATPEGYWRIRGRPARVRQ-CGRTIAFKTPMDFYRGRPPHGYRTPWSMFEYAL 84 
                       33335888888888887888888****************99.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100520.9111113IPR003441NAC domain
SuperFamilySSF1019414.58E-1713112IPR003441NAC domain
PfamPF023651.2E-41684IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MDAVDGRNGD KERLGFFFAR EEDKGTYSNG CYHATPEGYW RIRGRPARVR QCGRTIAFKT  60
PMDFYRGRPP HGYRTPWSMF EYALNAADWR NDGLRNTTQP WMNSYVVCKV RKRERQQASD  120
GRAERFCRSL LPRRSFFKIV SPRSFRLEKI VDGAPPPLKE EETAPERVGG EKGLRGNRMR  180
PNMF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g14952.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014751304.21e-133NAC transcription factor 29
TrEMBLA0A2K2CHB51e-133A0A2K2CHB5_BRADI; Uncharacterized protein
STRINGBRADI5G14950.11e-130(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.13e-12NAC domain containing protein 28