PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi5g16270.1.p

Common Name

BRADI_5g16270, LOC100828254

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

TCP

Protein Properties

Length: 203aa MW: 21532.3 Da PI: 10.107

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi5g16270.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	110.6	2.3e-34	51	165	4	89
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.sec..eaesssssas.nsssg.... 88 +k +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++t+eWLl+qa+p+i ++tg+++++a +c +++s+s + ++ + Bradi5g16270.1.p 51 AKAGGKDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTVEWLLRQAEPSILAATGSGTTPAvFSCssAPSASVSLLGkRPR-Edqep 142 677789********************************************************8888844444422222222222222.13444 PP TCP 89 ......................k 89 + Bradi5g16270.1.p 143 apssfwealqarptmawglspsQ 165 55555666544333333333321 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.3E-29	54	139	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.932	55	109	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MASPDAAATF QLYRPMSTSM PTPTPTPQTM TLPFSSEGGD AVVPASTRKP AKAGGKDRHS 60 KVNGRGRRVR MPIVCAARVF QLTRELGLKS DGQTVEWLLR QAEPSILAAT GSGTTPAVFS 120 CSSAPSASVS LLGKRPREDQ EPAPSSFWEA LQARPTMAWG LSPSQEAQAY ASVAHQGHVH 180 HHHLNLLSTL SGAARPPEEE SR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi5g16270.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK359408	1e-133	AK359408.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1096D21.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003580173.1	1e-146	transcription factor TCP21
Swissprot	Q9FMX2	4e-38	TCP7_ARATH; Transcription factor TCP7
TrEMBL	I1IZV3	1e-144	I1IZV3_BRADI; Uncharacterized protein
STRING	BRADI5G16270.1	1e-145	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1941	33	100
Representative plant	OGRP922	14	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08330.1	5e-35	TCP family protein

Link Out ? help Back to Top
Phytozome	Bradi5g16270.1.p
Entrez Gene	100828254