PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g17170.2.p
Common NameBRADI_5g17170, LOC100825679
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HD-ZIP
Protein Properties Length: 243aa    MW: 27208.5 Da    PI: 5.0868
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g17170.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.62.5e-1953106456
                       -SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       +++ft+eq++ Le+ F+  + ++  +e++eLA++lgL+ rqV +WFqN+Ra+++
  Bradi5g17170.2.p  53 KRRFTEEQIRSLESTFHAhQAKLEPREKAELARELGLQPRQVAIWFQNKRARWR 106
                       458**************989*********************************9 PP
2HD-ZIP_I/II122.71.8e-3952144293
       HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                       +krr+++eq+++LE++F++++ kLep++K+elareLglqprqva+WFqn+RAR+++kqlE+d++aL+++ydal+++ e+L++++ +L+++l+e
  Bradi5g17170.2.p  52 RKRRFTEEQIRSLESTFHAHQaKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEHDFAALRAKYDALHSRVESLKQDKLTLTTKLHE 144
                       8*******************99******************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.65347108IPR001356Homeobox domain
SuperFamilySSF466896.68E-1848110IPR009057Homeodomain-like
SMARTSM003893.6E-1850112IPR001356Homeobox domain
CDDcd000863.76E-1652109No hitNo description
PfamPF000469.2E-1753106IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.6E-1954113IPR009057Homeodomain-like
PRINTSPR000315.8E-77988IPR000047Helix-turn-helix motif
PROSITE patternPS00027083106IPR017970Homeobox, conserved site
PRINTSPR000315.8E-788104IPR000047Helix-turn-helix motif
PfamPF021834.0E-13108149IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MDRGEYQQQQ QFLMPPPALQ TMQQQRELCV PLMEEQLLMG GRRGGGAASE MRKRRFTEEQ  60
IRSLESTFHA HQAKLEPREK AELARELGLQ PRQVAIWFQN KRARWRSKQL EHDFAALRAK  120
YDALHSRVES LKQDKLTLTT KLHELSERLR EQGGGAATAT ASSSSCGDGC SEELEVDDKR  180
NIGVEPPESC VLGGCATPAD VSVDSECGDH VDYSGGFPES FCATPELWEP WPWPPVEWNA  240
VA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13945GGRRGGG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g17170.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT2243761e-130KT224376.1 Triticum aestivum cultivar RAC875 HDZipI-5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003580250.11e-180homeobox-leucine zipper protein HOX22
SwissprotQ01IK04e-85HOX22_ORYSI; Homeobox-leucine zipper protein HOX22
SwissprotQ7XUJ54e-85HOX22_ORYSJ; Homeobox-leucine zipper protein HOX22
TrEMBLA0A0Q3P4X71e-178A0A0Q3P4X7_BRADI; Uncharacterized protein
STRINGBRADI5G17170.11e-177(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40273175
Representative plantOGRP1482144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.27e-29homeobox 7