PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi5g17281.1.p

Common Name

BRADI_5g17281, LOC100840495

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Trihelix

Protein Properties

Length: 199aa MW: 21821.2 Da PI: 11.6279

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi5g17281.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	32.5	2.3e-10	24	85	1	65
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkik 65 +Wt +e+laL +a++ + +++r+ l+ ++W++v++ ++++ qC++k+e+l++r + + Bradi5g17281.1.p 24 CWTPDETLALARAYTARRLAVGRAHLASADWAAVAAEA---TPSKTARQCRHKIEKLRRRLRSKR 85 8*******************************9865...5578999*********998766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	5.1E-8	23	86	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.2E-4	24	82	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.411	25	78	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MTTSPPSPTT NAMMPSARRV PPPCWTPDET LALARAYTAR RLAVGRAHLA SADWAAVAAE 60 ATPSKTARQC RHKIEKLRRR LRSKRRRPFP LLDGIDLLDD PSPSPSHSRS QSPSPPPPAS 120 PPPPSASPPK KRKRPDAAES DVVKALKAIG EGFVRAELRR MEAARETQRM RMEMALRHLD 180 AQRQLVDGLV GRIVDALE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	75	81	KLRRRLR
2	76	82	LRRRLRS
3	128	134	PKKRKRP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi5g17281.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP098063	1e-146	FP098063.1 Phyllostachys edulis cDNA clone: bphylf053e20, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014750970.1	1e-137	uncharacterized protein LOC100840495
TrEMBL	A0A0Q3P4Y8	1e-136	A0A0Q3P4Y8_BRADI; Uncharacterized protein
STRING	GRMZM2G320827_P01	2e-64	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13911	20	24
Representative plant	OGRP13172	4	5

Link Out ? help Back to Top
Phytozome	Bradi5g17281.1.p
Entrez Gene	100840495