PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g17395.3.p
Common NameBRADI_5g17395
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 214aa    MW: 23037.2 Da    PI: 8.3752
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g17395.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY34.54.1e-11160188129
                       ---SS-EEEEEEE--TT-SS-EEEEEE-S CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCts 29 
                       ldDgy+WrKYGqK+vk+s +p   + C+ 
  Bradi5g17395.3.p 160 LDDGYKWRKYGQKVVKNSLHPSFPFWCSD 188
                       59*******************99999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-12145188IPR003657WRKY domain
SuperFamilySSF1182901.1E-10152188IPR003657WRKY domain
PROSITE profilePS5081113.724155213IPR003657WRKY domain
SMARTSM007742.2E-4160205IPR003657WRKY domain
PfamPF031069.5E-8161188IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MEGTSRLEAC LPSLYALDPY TAPPPPLPPF LAPLPNQQHK LLQMPLVVQE QSVNHGVMFS  60
SDHGGGGLYP LLPGIPFCHS AAAAAASDKP ETGFAPLAAG EVGTSAARAG NEVASTTTTT  120
ATRHGASSWW KGAEKGKMKV RRKMREPRFC FQTRSDVDVL DDGYKWRKYG QKVVKNSLHP  180
SFPFWCSDDS IPDIPSPSVE CSCQQLATAA RQR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00618PBMTransfer from AT2G44745Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g17395.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014751531.11e-109probable WRKY transcription factor 12
TrEMBLA0A0Q3E7P41e-157A0A0Q3E7P4_BRADI; Uncharacterized protein
STRINGTraes_2AL_B1270662B.12e-88(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44745.12e-28WRKY family protein