PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g17490.1.p
Common NameBRADI_5g17490, LOC100844648
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 365aa    MW: 38577.9 Da    PI: 4.7715
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g17490.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.29.9e-19174225256
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       +y+GVr+++ +g+++AeIrdp+ +g   r++lg+++t  eAa+a+++a+ +++g+
  Bradi5g17490.1.p 174 KYRGVRQRP-WGKFAAEIRDPKRRG--SRVWLGTYDTSVEAARAYDRAAFRMRGA 225
                       8********.**********96554..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.0E-32173233IPR001471AP2/ERF domain
PfamPF008473.6E-14174224IPR001471AP2/ERF domain
SuperFamilySSF541714.05E-22174233IPR016177DNA-binding domain
PROSITE profilePS5103224.144174232IPR001471AP2/ERF domain
CDDcd000184.61E-30174233No hitNo description
SMARTSM003801.8E-36174238IPR001471AP2/ERF domain
PRINTSPR003672.4E-13175186IPR001471AP2/ERF domain
PRINTSPR003672.4E-13214234IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MDFAGEMDDF ALEIIREHLL GGDGSTTTAV VPATAADNNH EFPDGGVTFP VPQPPSAAPE  60
PAYLQPAMSF FPQEEQLQGR PYAYTDLTQE YVNSSPAGAD MGEVVTFRAP EPVMIQFGGE  120
PSPVATTARA PPSSLTISLP RSSGGSFGWP PRAQQAAAAA AGAAAAPDCQ DFRKYRGVRQ  180
RPWGKFAAEI RDPKRRGSRV WLGTYDTSVE AARAYDRAAF RMRGAKAILN FPNEVGTRGA  240
ELWAPPPPPA PTSQAATGTT NKRKRSQDQE EYCYPEVEAA NKAVKTEAAP SPSADTPSSV  300
SREMSTGTAC STVTSAATSE GGFPPLTPSS SGWEQYWEAL LGGMPLLSPL SPHPALGFPQ  360
LTVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-26173237468ATERF1
3gcc_A2e-26173237468ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g17490.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3735751e-79AK373575.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3035F11.
GenBankKT9622111e-79KT962211.1 Hordeum vulgare cultivar CI9831 ERF5 mRNA, complete cds.
GenBankKT9622121e-79KT962212.1 Hordeum vulgare cultivar AC Metcalfe ERF5 mRNA, complete cds.
GenBankKT9622131e-79KT962213.1 Hordeum vulgare cultivar Zheddar ERF5 mRNA, complete cds.
GenBankKT9622141e-79KT962214.1 Hordeum vulgare cultivar CDC Copeland ERF5 mRNA, complete cds.
GenBankKT9622151e-79KT962215.1 Hordeum vulgare cultivar H106371 ERF5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003581490.10.0AP2/ERF and B3 domain-containing protein Os01g0693400
TrEMBLI1J0A30.0I1J0A3_BRADI; Uncharacterized protein
STRINGBRADI5G17490.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.12e-32ethylene responsive element binding factor 5