PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g17570.1.p
Common NameBRADI_5g17570, LOC100846176
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HD-ZIP
Protein Properties Length: 226aa    MW: 25361.7 Da    PI: 9.1891
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g17570.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.11.7e-1974128256
                       T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       rk+ +++k+q  +Le+ F+++++++ ++++ LA++lgL  rqV vWFqNrRa+ k
  Bradi5g17570.1.p  74 RKKLRLSKDQSAVLEDSFREHPTLNPRQKAALAQQLGLRSRQVEVWFQNRRARTK 128
                       788899***********************************************98 PP
2HD-ZIP_I/II126.21.5e-4074163191
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                       +kk+rlsk+q+++LE+sF+e+ +L+p++K++la++Lgl+ rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l
  Bradi5g17570.1.p  74 RKKLRLSKDQSAVLEDSFREHPTLNPRQKAALAQQLGLRSRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQKEVQELR-AL 163
                       69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.09E-1861131IPR009057Homeodomain-like
PROSITE profilePS5007117.28170130IPR001356Homeobox domain
SMARTSM003891.7E-1672134IPR001356Homeobox domain
PfamPF000467.9E-1774128IPR001356Homeobox domain
CDDcd000865.51E-1574131No hitNo description
Gene3DG3DSA:1.10.10.601.7E-1874128IPR009057Homeodomain-like
PRINTSPR000314.0E-6101110IPR000047Helix-turn-helix motif
PROSITE patternPS000270105128IPR017970Homeobox, conserved site
PRINTSPR000314.0E-6110126IPR000047Helix-turn-helix motif
SMARTSM003405.3E-25130174IPR003106Leucine zipper, homeobox-associated
PfamPF021832.0E-11130164IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009641Biological Processshade avoidance
GO:0009733Biological Processresponse to auxin
GO:0009735Biological Processresponse to cytokinin
GO:0009826Biological Processunidimensional cell growth
GO:0010016Biological Processshoot system morphogenesis
GO:0010017Biological Processred or far-red light signaling pathway
GO:0010218Biological Processresponse to far red light
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MMERAEDLGL SLSLSSSLAP RTHHVSKLFH APERRFMEMP LLPAKRSSEA AGDDSSLLGG  60
SDEEDGGCGV DGSRKKLRLS KDQSAVLEDS FREHPTLNPR QKAALAQQLG LRSRQVEVWF  120
QNRRARTKLK QTEVDCEFLK RCCETLTEEN RRLQKEVQEL RALKLVSPRH YMHMSPPTTL  180
TMCPSCERVS NKNNNNNNNN SSAAADRRGD VAICHRPIAV RPQQS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17278SRKKLRL
2122130RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g17570.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1220061e-155AK122006.1 Oryza sativa Japonica Group cDNA clone:J033110O17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003581495.11e-166homeobox-leucine zipper protein HOX17
SwissprotQ01I231e-105HOX17_ORYSI; Homeobox-leucine zipper protein HOX17
TrEMBLI1J0B51e-165I1J0B5_BRADI; Uncharacterized protein
STRINGBRADI5G17570.11e-166(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25873889
Representative plantOGRP19616156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.13e-72homeobox-leucine zipper protein 3