PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g17620.1.p
Common NameBRADI_5g17620, LOC100821277
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 252aa    MW: 26453.7 Da    PI: 5.0928
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g17620.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42e-1967116255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        y+GVr +  +g+Wv+eIr+p++   + r++lg+f+t+e+Aa+a++aa+ +++g
  Bradi5g17620.1.p  67 TYRGVRMRT-WGKWVSEIREPRK---KSRIWLGTFDTPEMAARAHDAAAIAIKG 116
                       69****998.**********843...6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.6E-1367116IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-3267125IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-2267125IPR016177DNA-binding domain
PROSITE profilePS5103223.07767124IPR001471AP2/ERF domain
SMARTSM003806.5E-3767130IPR001471AP2/ERF domain
PRINTSPR003671.1E-106879IPR001471AP2/ERF domain
CDDcd000189.50E-2168126No hitNo description
PRINTSPR003671.1E-1090106IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MEQEQVLVLL PQVSNSCTCS GSNTTSSSSS STLNASSPSS GDSSGSGSDV GAVGKKKRPR  60
RDLKHPTYRG VRMRTWGKWV SEIREPRKKS RIWLGTFDTP EMAARAHDAA AIAIKGRAAT  120
LNFPALAHEL PRAASAAPKD VQAAAALAAA ATHCPAVAAV LSPSPDATIG LEGQGPATAV  180
RDCWIDDEIL TRGNGCIGGL DLDLAFFDVP DDALLGFGFT LPEPPSYCGS PWDDVPVDDL  240
FFGEPLPLWE H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-19641241172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g17620.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278644e-94KJ727864.1 Zea mays clone pUT5956 AP2-EREBP transcription factor (EREB185) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003581498.10.0ethylene-responsive transcription factor ERF039
TrEMBLI1J0C00.0I1J0C0_BRADI; Uncharacterized protein
STRINGBRADI5G17620.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.12e-25ERF family protein