PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g18961.1.p
Common NameBRADI_5g18961, LOC100840596
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GRF
Protein Properties Length: 239aa    MW: 25439.1 Da    PI: 11.1514
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g18961.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.41.5e-24139183145
               WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                       +++pgrCrRtDGKkWRCsr v++g k+CErH+hrgr rsrk++e+
  Bradi5g18961.1.p 139 EPQPGRCRRTDGKKWRCSRGVVPGLKYCERHVHRGRGRSRKPVEA 183
                       689***************************************985 PP
2QLQ47.45.8e-1771106237
               QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                       ++T +Q q+L+ Q+l+y+y+aa++PvP +L+++i+k
  Bradi5g18961.1.p  71 SLTFMQRQELECQVLIYRYFAASAPVPVHLVLPIWK 106
                       799********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009515.1E-470106IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166619.64171106IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.1E-1071105IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166723.959139183IPR014977WRC domain
PfamPF088791.1E-19140182IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MTERKPACSP PSKLPRLSGA RVDDGEVTMA APSPLVLGLG LGVGGYRSDS DKEASASSSR  60
DTRPTPKPTP SLTFMQRQEL ECQVLIYRYF AASAPVPVHL VLPIWKSLAS SSSSSSGLQR  120
FPSLTGLGRL CFDQRSSVEP QPGRCRRTDG KKWRCSRGVV PGLKYCERHV HRGRGRSRKP  180
VEAAATNAIP IRAVHADAGA QAADARSLAL PLPPPQQQRF SSTGAGVLVV HGAARAPR*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g18961.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010227228.11e-171growth-regulating factor 12
SwissprotQ6AWX76e-76GRF12_ORYSJ; Growth-regulating factor 12
TrEMBLA0A0Q3ECM31e-169A0A0Q3ECM3_BRADI; Uncharacterized protein
STRINGTraes_2BL_DE9A7327E.14e-86(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62213051
Representative plantOGRP4601684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36400.14e-33growth-regulating factor 3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]