PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g19260.2.p
Common NameBRADI_5g19260, LOC100839472
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 414aa    MW: 44036.1 Da    PI: 6.5194
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g19260.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B394.19.8e-30100188185
                       EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                       f+kv tpsdv+k++rlv+pk++ae++    +  +e++  l++ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F + 
  Bradi5g19260.2.p 100 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSAANEKGLLLSFEDRTGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFCRG 188
                       89***************************955556889************************************************854 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.0E-4192206IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.36E-2997200IPR015300DNA-binding pseudobarrel domain
CDDcd100171.36E-2598185No hitNo description
SMARTSM010194.7E-21100205IPR003340B3 DNA binding domain
PROSITE profilePS5086313.733100205IPR003340B3 DNA binding domain
PfamPF023629.6E-27100203IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MEFTPAGTSS RFSREGEEEE EEEGEELEEE EASPREIPFM TTMTAAASSS SSPTSASPSA  60
AASASASARS SDGAGASGSG GGGGGGGGGD VEVIEKEHMF DKVVTPSDVG KLNRLVIPKQ  120
HAEKYFPLDS AANEKGLLLS FEDRTGKLWR FRYSYWNSSQ SYVMTKGWSR FVKEKRLDAG  180
DTVSFCRGAA EATRDRLFID WKRRAELIRD PHRGLARLPM PMPTSSPYGP WGAGAGGFYM  240
PPAPPATLYE HHRLRQGYDF RNINAPAPAR QVLFFGSAAG AMPPHAPMLP PPQPQQQPPL  300
HIAVPVQPSP VVTVGLPMVL DSVPLAGSPT TAAKRVRLFG VNLDNPHSHG GGESSNDANA  360
LSLRMPGWQR PTPHRLLELP PHGAAGAESS AASSPSSSSS SKREAHSSLD LDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A7e-61952073116B3 domain-containing transcription factor NGA1
5os9_B7e-61952073116B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g19260.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003580380.10.0B3 domain-containing protein Os02g0683500
SwissprotQ6EU301e-132Y2835_ORYSJ; B3 domain-containing protein Os02g0683500
TrEMBLI1J0X20.0I1J0X2_BRADI; Uncharacterized protein
STRINGBRADI5G19260.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Representative plantOGRP36516108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.12e-67B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]