PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g20397.2.p
Common NameBRADI_5g20397, LOC100842003
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 466aa    MW: 51728.9 Da    PI: 5.0466
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g20397.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.43.5e-10265311354
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       +a+ + Er RR+++N ++ +L++l P++     +K + a+++  A+eYI +L
  Bradi5g20397.2.p 265 KANFATERERREQLNVKYKTLKDLFPNP-----TKSDRASVVGDAIEYIDEL 311
                       68899***********************.....9***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.287262311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.07E-11265328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-7265311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-8268317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-10269320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.22E-7271316No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MIIGGDYFEG SHDHSLMAGS LIHDSSQAPK CNGNTDIELQ KFKVPSFSSE ILTNSTNLSS  60
EAARAINHLQ HQLGIDLEQD MQPVETATWD ASICSIQDHI INNQISEDPQ NILVEQQIQQ  120
YDAAIYPNSS YTPAPDLLNL LHCTVAPAFP TTTSVFGDTS LSSTNYLDLN GEFTGVAATP  180
ESGLMFTSDS ALQLGYHATQ SHPLKDICHS LPQNYGLFPG EDEREVMIGV GSVGGDIFQD  240
IDDRQFDTVL ECRRGKGEFG KGKGKANFAT ERERREQLNV KYKTLKDLFP NPTKSDRASV  300
VGDAIEYIDE LNRTVKELKI LVEQKWHGNK RTKIIKLDEE VAADGESSSM KPMRDDQDNQ  360
FDGTIRSSWV QRRSKECHID VRIVENEVNI KLTEKKKVNS LLHAARVLDE FQLELIHAVG  420
GIIGDHHIFM FNTKVSEGSS VYACAVAKRL LQAVDAQHQA INIFH*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development (PubMed:23519457, PubMed:23385589). Interacts with TDR and promote tapetal PCD by regulating the expression of RTS, and the two lipid-transfer proteins C4 and C6, which function in microspore development (PubMed:23519457). Acts downstream from and interacts with TDR in the regulation of tapetal PCD. Regulates directly the aspartic protease AP25 and AP37 during tapetal PCD (PubMed:23385589). May not target the cysteine protease CP1 (PubMed:23519457, PubMed:23385589). {ECO:0000269|PubMed:23385589, ECO:0000269|PubMed:23519457}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g20397.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3625774e-83AK362577.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2008E10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010240358.10.0transcription factor EAT1
RefseqXP_024311738.10.0transcription factor EAT1
RefseqXP_024311739.10.0transcription factor EAT1
SwissprotQ7X8R00.0EAT1_ORYSJ; Transcription factor EAT1
TrEMBLI1J1C20.0I1J1C2_BRADI; Uncharacterized protein
STRINGBRADI5G20397.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19043796
Representative plantOGRP26591431
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.11e-51bHLH family protein