PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g21820.1.p
Common NameBRADI_5g21820
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 983aa    MW: 110209 Da    PI: 7.8817
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g21820.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR175.98.4e-24211294190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                       ++Y +YA +vGFsvrk    k+ ++    +r +vCs+eg+r++++ k     r+r+etr+gC a+l +k+ ++gk++vtk++++HnH+la
  Bradi5g21820.1.p 211 EYYVSYAGNVGFSVRKGLWDKTVKS-ASRSRAYVCSREGFRSKNDAK-----RPRPETRMGCPAQLAIKLASNGKYRVTKFVQDHNHQLA 294
                       69***************99999555.589**************9887.....************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.3E-21211294IPR004330FAR1 DNA binding domain
PfamPF105519.4E-25391485IPR018289MULE transposase domain
PROSITE profilePS5096610.039658705IPR007527Zinc finger, SWIM-type
PfamPF044345.4E-5660700IPR007527Zinc finger, SWIM-type
SMARTSM005751.1E-4680707IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 983 aa     Download sequence    Send to blast
MSCRPLHFPI PPIPHGHTMA TSSGNPAAAG DPAASSSAQN PPHHPTPRIS HIVRTYLDLS  60
SNPKKRRAAP KNKQPKPGGA ETPAAGEHKG CGPSGVAASV HPSRLLRELG IRVSRYTHEE  120
RQDIITRYMQ KRGGRPGVNR AASKVPSRQA LAGRRRRGAG GKFLGKDDVE TADKPEEKVE  180
EEPELPPEVV ANAGGVPIVG MVFESEEKAY EYYVSYAGNV GFSVRKGLWD KTVKSASRSR  240
AYVCSREGFR SKNDAKRPRP ETRMGCPAQL AIKLASNGKY RVTKFVQDHN HQLAGPFDIG  300
MLKSQRVLSK FQAGNRIANN IPPGYKNYLR TKSTKDMNSG DLGDLMEYFR SMKSDNPSFY  360
YAIQVDANDK AANFFWADAR SILDYHYFSD VICFDMTYKM NNSSRPLSLF LGMNHHRQMV  420
IFGAAFLYDE TAESFKWLLE TFKSAMCGKQ PKTILTGRST TLKEALSLTW PGTIHRSCVW  480
QIYQNAIRCL GHLFSTSEEF AHDFSHCIFD VEDGQEFVDT WDAIIEKYNL KENEWLNELY  540
EDRENWALPY GRQIFSGDIK SMLQAETFGV MVKEYLDCKK ELSYLLKFLG SSVEKRRQEE  600
IQADYKASQG TPGTPQPLLW QAANMYTPIN FELFMREYEL CMDCMVYGCG EFGSLSEYMV  660
TVKNKTREQL VQFDSSDGTI ACTCKKFETT GILCCHILKV HELRNVKEIP AQYFLKRWSK  720
DAKMGTVDEI SGFNFDTDTG SSVPERYAAL CRLFYRIAAK AAENVEVFAL VASQSDQLVE  780
GVERILQSTL ADQSSVVHSI KDQLTRMVQN DYLLGSSNEV QKSIGKKKGQ VARGNGLETN  840
KRQRARKGHP DEAVAGPRDG ELNVTPESMQ TETRNVTDQF LPDQLMQEHY ALGHNFGVST  900
SQNLHDSLNQ FGQASAVSTM QRQPFPGNGQ VTQDYPGDMH ALQFVETNPQ IDSENGDQDQ  960
SSIPVWDFLR CASSHDLHTS PR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1255259KRPRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g21820.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010240422.10.0protein FAR1-RELATED SEQUENCE 7
TrEMBLA0A2K2CII90.0A0A2K2CII9_BRADI; Uncharacterized protein
STRINGBRADI5G21820.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP1624233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-105FAR1-related sequence 5