PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g22984.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 198aa    MW: 22146.5 Da    PI: 12.38
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g22984.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.91e-0748751847
                      HTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding 18 qlGggtWktIartmgkgRtlkqcksrwqky 47
                      ++G + Wk+I +++  ++t  q++s+ qky
  Bradi5g22984.1.p 48 RFGRD-WKKIEEHVR-TKTTVQIRSHAQKY 75
                      56755.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF002495.5E-64875IPR001005SANT/Myb domain
TIGRFAMsTIGR015576.2E-84878IPR006447Myb domain, plants
SuperFamilySSF466898.97E-84881IPR009057Homeodomain-like
CDDcd001670.006835276No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
TANRLLTLSL RLVYIRVGAH RPMNRERPAS SRSKEAWIRR QRGRRGRRFG RDWKKIEEHV  60
RTKTTVQIRS HAQKYFLKVQ KLGLAAGLPP HHPIRSLGVA QSTAAASVAV PGPMMVLHGQ  120
PQECPPGALL QSSIGWSCPG LLPASNDMQS FNWEGSSGPS SAWAAVHHRH RHPWEHRDSA  180
TRAWIGLAPA TRPKRRR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g22984.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024311524.11e-105protein REVEILLE 4-like
TrEMBLA0A2K2CIR41e-140A0A2K2CIR4_BRADI; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36423170
Representative plantOGRP9281558
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09600.21e-13MYB_related family protein