PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g23340.2.p
Common NameBRADI_5g23340, LOC100845150
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bZIP
Protein Properties Length: 416aa    MW: 46371.4 Da    PI: 5.4877
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g23340.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.88.3e-12119161241
                       XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS
            bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41 
                       +++k+ rr+++NReAAr+sR+RKka+i++Le+   k ++Le+e
  Bradi5g23340.2.p 119 PPDKVLRRLAQNREAARKSRLRKKAYIQQLETsriKLAQLEQE 161
                       5799**************************9722244444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.8E-8116166No hitNo description
SMARTSM003387.5E-5118171IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.887120164IPR004827Basic-leucine zipper domain
PfamPF001701.5E-8120161IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.56E-7122166No hitNo description
PROSITE patternPS000360125140IPR004827Basic-leucine zipper domain
PfamPF141446.9E-26211288IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MELYPGYLED HFNIHKLSGA GTSPPEYMTS ASAQFAPAPL RMGMYERPPP QQPMPPSPQP  60
VVGMWNNSVD TYKVDSGQAT SGSTIMEADT KFDDAELEEV PGMEELEPTR DVDQEASKPP  120
DKVLRRLAQN REAARKSRLR KKAYIQQLET SRIKLAQLEQ ELQRTRQQQG LYPPGHSGMA  180
GFGGVGGVPM DSGVAAFEIE YGHWVDEQNR HTRELRGALQ PGQQTTELEL RMLVETGLGN  240
YDHLFRIKNL AASADVFCVM YGLWRSPAER FFLWIGGFRP SEVLKVLRPQ LEPLTDQQLE  300
QVYHLQQSST QAEDALSQGM ERLQQTLADA LTAAADPFAS PDGYSGMNDA IGKLKGLVCF  360
LHQADHLRLE TLQQMQKILT TRQAARGLLA LGDYFERLRA LSSLWAARPR ESAIS*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00502DAPTransfer from AT5G10030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g23340.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003580646.10.0transcription factor TGAL6
SwissprotA0A0P0WFC80.0TGAL6_ORYSJ; Transcription factor TGAL6
TrEMBLA0A0Q3KXI50.0A0A0Q3KXI5_BRADI; Uncharacterized protein
STRINGBRADI5G23340.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10030.21e-103TGACG motif-binding factor 4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Okada A, et al.
    OsTGAP1, a bZIP transcription factor, coordinately regulates the inductive production of diterpenoid phytoalexins in rice.
    J. Biol. Chem., 2009. 284(39): p. 26510-8
    [PMID:19635799]
  3. Okada K
    The biosynthesis of isoprenoids and the mechanisms regulating it in plants.
    Biosci. Biotechnol. Biochem., 2011. 75(7): p. 1219-25
    [PMID:21737944]
  4. Yamane H
    Biosynthesis of phytoalexins and regulatory mechanisms of it in rice.
    Biosci. Biotechnol. Biochem., 2013. 77(6): p. 1141-8
    [PMID:23748776]
  5. Miyamoto K, et al.
    Identification of target genes of the bZIP transcription factor OsTGAP1, whose overexpression causes elicitor-induced hyperaccumulation of diterpenoid phytoalexins in rice cells.
    PLoS ONE, 2014. 9(8): p. e105823
    [PMID:25157897]
  6. Miyamoto K, et al.
    Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells.
    J. Plant Physiol., 2015. 173: p. 19-27
    [PMID:25462074]