PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g24080.1.p
Common NameBRADI_5g24080, LOC100835061
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WOX
Protein Properties Length: 237aa    MW: 25356.6 Da    PI: 9.5591
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g24080.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.21.9e-2082141357
                       --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                       +R+++++eq+++Le+l++   r+p+a+++e+++++l    +++ ++V++WFqN++a+e++
  Bradi5g24080.1.p  82 TRWNPSTEQIKVLEALYRGgMRTPNAAQIERITEELgrhgRIEGKNVFYWFQNHKARERQ 141
                       8*****************99**************************************97 PP
2Wus_type_Homeobox115.72.2e-3781143365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        +tRW+P++eQik+Le+ly+ G+rtPn+++i+rit+eL ++G+ie+kNVfyWFQN+kaRerqkq
   Bradi5g24080.1.p  81 TTRWNPSTEQIKVLEALYRGGMRTPNAAQIERITEELGRHGRIEGKNVFYWFQNHKARERQKQ 143
                        69***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.38277142IPR001356Homeobox domain
SMARTSM003896.3E-879146IPR001356Homeobox domain
SuperFamilySSF466893.94E-1380147IPR009057Homeodomain-like
CDDcd000861.67E-582143No hitNo description
PfamPF000466.1E-1882141IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.7E-882141IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0007165Biological Processsignal transduction
GO:0010067Biological Processprocambium histogenesis
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MRLQHLHVAY LENKKAASSS SSALSPSQTP STFPFAFQCL RPLAPKISLP EPRTKAPEFG  60
RVRTAASKLL ACTVQVAAGG TTRWNPSTEQ IKVLEALYRG GMRTPNAAQI ERITEELGRH  120
GRIEGKNVFY WFQNHKARER QKQKRAALLT LATAGTGLDD SSDSPPPPPE TTTTTKDGAE  180
KMEAAACADV DVTTSCKRRC KAWGDGGHGG AAETEGGGAA DDVTLELFPL RPQGKA*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g24080.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5561818e-80AJ556181.1 Oryza sativa Japonica Group partial mRNA for homeobox protein HB3 (hb3 gene).
GenBankJF8361598e-80JF836159.1 Oryza sativa Japonica Group WUSCHEL-like homeobox protein (WOX4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010227318.21e-175WUSCHEL-related homeobox 4
SwissprotQ25AM23e-89WOX4_ORYSI; WUSCHEL-related homeobox 4
SwissprotQ7XTV33e-89WOX4_ORYSJ; WUSCHEL-related homeobox 4
TrEMBLI1J2M21e-173I1J2M2_BRADI; Uncharacterized protein
STRINGBRADI5G24080.11e-174(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP126923035
Representative plantOGRP71671117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46480.11e-32WUSCHEL related homeobox 4