PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g24710.1.p
Common NameBRADI_5g24710
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 163aa    MW: 17638.1 Da    PI: 9.3836
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g24710.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.6e-18857255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                      +ykGVr+++ +g+Wv+eIr+p        +r +lg++ t+e Aa+a+++a++ l+g
  Bradi5g24710.1.p  8 RYKGVRQRH-WGSWVSEIRHP-----AmkTRLWLGTYSTEERAARAYDEAAEMLNG 57
                      7*******9.**********8.....345***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.549865IPR001471AP2/ERF domain
CDDcd000181.61E-29867No hitNo description
Gene3DG3DSA:3.30.730.101.5E-30866IPR001471AP2/ERF domain
PfamPF008471.2E-12857IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-19867IPR016177DNA-binding domain
SMARTSM003801.8E-32871IPR001471AP2/ERF domain
PRINTSPR003673.1E-9920IPR001471AP2/ERF domain
PRINTSPR003673.1E-93147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MPKVPLERYK GVRQRHWGSW VSEIRHPAMK TRLWLGTYST EERAARAYDE AAEMLNGPAA  60
RMNFPASVDV TGSLHAYDRA KVEKYRMLPP SSSTAMTKAA PVLPPSQDGA KAVASSSSSA  120
GAGGGAMIFT DDLKFIEEMI KEMTHDGPIE LVPISSVRSA TQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-14969667ATERF1
3gcc_A4e-14969667ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g24710.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003579417.13e-50ethylene-responsive transcription factor ERF003
TrEMBLI1J2V31e-115I1J2V3_BRADI; Uncharacterized protein
STRINGBRADI5G24710.11e-116(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141835118
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.15e-22ERF family protein