PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g26100.2.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 399aa    MW: 43786.5 Da    PI: 6.5015
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g26100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.83e-16266361395
                       EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS
                B3   3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89 
                       k lt+sdv++ gr+vlpk+ ae++   + ++ +  l++ d +   +W++k+++  ++ks++y+l+  + eFvk++gL++gD+++++  ++ ++
  Bradi5g26100.2.p 266 KDLTNSDVGNIGRIVLPKRDAEANlpALLERDGLILQMDDFNLvATWNFKYRFwpNNKSRMYILE-STGEFVKSHGLEAGDTLIIY--KNpES 355
                       789***********************777778888999995545*******99787888888888.9*******************..66688 PP

                       E..EEE CS
                B3  90 felvvk 95 
                       ++++v+
  Bradi5g26100.2.p 356 GKFLVR 361
                       877775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.3E-24261368IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.55E-18263360IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.545264366IPR003340B3 DNA binding domain
SMARTSM010193.0E-9264364IPR003340B3 DNA binding domain
PfamPF023627.5E-13266361IPR003340B3 DNA binding domain
CDDcd100173.65E-21268361No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MGNNRCASPN GGLLHHHHQG HGFYNNHPPA GGGGPIHAPP PMPVAMAPPY AAAASATTMQ  60
PPPCALSGYQ YWQATGSQNG VSAQQVPGGF ADWTVYNHSA FMSVTCGSSS STNNGYHHQS  120
LRPCSTTAWP NFMTRNPCYS TYPPAIHDHQ SPSYHSNNHA EDSGFASSFR VDPQLGHVPC  180
FPPMSPASNN HSPVQFFNEA PFTTKLQSEA MHTQKEKNSE DPPDMESENS EELNHNPVHE  240
NLNLNQGPED LTARFNCKEY HIVLRKDLTN SDVGNIGRIV LPKRDAEANL PALLERDGLI  300
LQMDDFNLVA TWNFKYRFWP NNKSRMYILE STGEFVKSHG LEAGDTLIIY KNPESGKFLV  360
RGEKASQQSA PLLCVECKEE GSNSEECGFA LSLHTKRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9c_A7e-372553524101B3 domain-containing transcription factor LEC2
6j9c_D7e-372553524101B3 domain-containing transcription factor LEC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g26100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003579476.40.0putative B3 domain-containing protein Os04g0676650
TrEMBLA0A0Q3EBV40.0A0A0Q3EBV4_BRADI; Uncharacterized protein
STRINGBRADI5G26100.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118172835
Representative plantOGRP7881766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.18e-38B3 family protein