PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi5g26240.1.p

Common Name

BRADI_5g26240, LOC100825377

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Dof

Protein Properties

Length: 218aa MW: 22370.5 Da PI: 7.3687

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi5g26240.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	116.5	1.1e-36	36	94	2	60
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +++ ++cprC s ntkfCyynnys++qPr+fC+aCrryWt+GG+lrnvPvGg++r++ + Bradi5g26240.1.p 36 QQQLVECPRCGSGNTKFCYYNNYSTAQPRHFCRACRRYWTHGGSLRNVPVGGACRRRDA 94 68899**************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	7.7E-32	38	93	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	6.0E-22	40	91	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.913	40	94	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	42	78	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MAPDAAATGK LPDQAPPLLA QGDHHQAGAG NGNGKQQQLV ECPRCGSGNT KFCYYNNYST 60 AQPRHFCRAC RRYWTHGGSL RNVPVGGACR RRDAAASGNA NKRRRASSSD SGYPSSSSAE 120 PPSSAAQDQL PPPALTFPFL SDGTAFFLPP PPQYDISLGA GSAAAAFSWP LYDGGLGAAP 180 WDDGTLSGAA AGAATGAWGN VDEFTGLDLS WPPASGN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	89	104	RRRDAAASGNANKRRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi5g26240.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012620	8e-43	CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003580828.1	1e-155	dof zinc finger protein DOF1.7
TrEMBL	I1J3D7	1e-154	I1J3D7_BRADI; Uncharacterized protein
STRING	BRADI5G26240.1	1e-155	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14047	24	27
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52440.1	2e-28	Dof family protein

Link Out ? help Back to Top
Phytozome	Bradi5g26240.1.p
Entrez Gene	100825377