PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g27400.1.p
Common NameBRADI_5g27400, LOC100836914
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARF
Protein Properties Length: 503aa    MW: 54533.6 Da    PI: 5.5488
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g27400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.31.4e-23107207299
                       EEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3   2 fkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                        k+lt+sd+++ g +++p+ +a++          ++ +  tl+++d+ g+ We+++iyr++++r++lt+GW++Fv+a+ L +gD vvF+  +r
  Bradi5g27400.1.p 107 AKQLTQSDANNGGGFSVPRFCADSVfpgldfdADPPVQ--TLRMRDLLGKLWEFRHIYRGTPRRHLLTTGWSRFVNAKLLVAGDAVVFM--RR 195
                       69****************9999999*****95444444..9************************************************..67 PP

                       SEE..EEEEE-S CS
                B3  88 sefelvvkvfrk 99 
                        ++el+ +v+r+
  Bradi5g27400.1.p 196 PDGELLAGVRRT 207
                       9********997 PP
2Auxin_resp52.81.8e-18235309182
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsL 82 
                       aa++a+++ +F+v+Y+Pr+++ eFvv++++ve+al +++ +G++++m+f   + ++ ++  G+v++v +        S Wr+L
  Bradi5g27400.1.p 235 AARRAAQGAPFTVTYYPRQGAGEFVVPRKEVEDALISPWEPGTQVRMQFLHPEDRRSEWiNGVVRAVDH--------SIWRML 309
                       68899********************************************87777777776999999876........555554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.22E-27101210IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-31103209IPR015300DNA-binding pseudobarrel domain
CDDcd100171.48E-18105206No hitNo description
PROSITE profilePS5086312.041106208IPR003340B3 DNA binding domain
SMARTSM010195.5E-13106208IPR003340B3 DNA binding domain
PfamPF023621.7E-20107207IPR003340B3 DNA binding domain
PfamPF065071.2E-13235314IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010208Biological Processpollen wall assembly
GO:0048830Biological Processadventitious root development
GO:0052543Biological Processcallose deposition in cell wall
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MAEQQDPPVV VDRDVWLACA TPLSRLPAVG AQVYYFPHGH SEQCPTALAA PLPHPHLFPC  60
TVAAVALSAD PSTDEPFATI SLVPGPHRAL GGGAPHHAVD PAFAHYAKQL TQSDANNGGG  120
FSVPRFCADS VFPGLDFDAD PPVQTLRMRD LLGKLWEFRH IYRGTPRRHL LTTGWSRFVN  180
AKLLVAGDAV VFMRRPDGEL LAGVRRTPRY PVSQDPAEPP RNARARVPAQ EVEDAARRAA  240
QGAPFTVTYY PRQGAGEFVV PRKEVEDALI SPWEPGTQVR MQFLHPEDRR SEWINGVVRA  300
VDHSIWRMLE IDWDESAPPS LKNRHVNAWQ VQLVGCPPLL KRLRIPETIA PLISGDVAMA  360
DPLAGPGSLY MPMLMGSPIP AGMQGARQDF LADFPSSSTR MLTTQLLFPS DHPIPPSPGG  420
GSSEVLNPEN GSPPQFPEEI RTIQLFGTTI TSAVQITNGS SEEVNQVPAA VVDGTANDDA  480
WETSPVDFTL LNGNDGHNQN GI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-551031550372Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g27400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003579544.10.0auxin response factor 13
RefseqXP_010240662.10.0auxin response factor 13
SwissprotQ7XSS91e-152ARFM_ORYSJ; Auxin response factor 13
TrEMBLI1J3S50.0I1J3S5_BRADI; Auxin response factor
STRINGBRADI5G27400.20.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113553137
Representative plantOGRP1320045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-93auxin response factor 17
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]