PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g27467.2.p
Common NameBRADI_5g27467
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 450aa    MW: 49590.6 Da    PI: 7.5344
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g27467.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.42e-511182661128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.................kvkaeekewyfFskrdkkyatgkrknr 76 
                       +ppGfrFhPt+eelv +yL++kv+++k++l ++i+evd+y++ePwdL++                 + ++++ ewyfFs +d+ky++g+r+nr
  Bradi5g27467.2.p 118 VPPGFRFHPTEEELVGYYLARKVASQKIDL-DIIQEVDLYRIEPWDLQErcgrqygagsgheedsfRSSSSSAEWYFFSFKDRKYPSGTRTNR 209
                       69****************************.99**************95589999999998888665555677******************** PP

               NAM  77 atksgyWkatgkdkevlsk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       at++g+Wkatg+dk+vl+      +g+++g++ktLvfy+grap+g+kt+W+mheyrl
  Bradi5g27467.2.p 210 ATAAGFWKATGRDKPVLRGghghgRGAVIGMRKTLVFYRGRAPNGRKTEWIMHEYRL 266
                       *****************98877777778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-55116287IPR003441NAC domain
PROSITE profilePS5100556.182118287IPR003441NAC domain
PfamPF023652.7E-27119266IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MLFGIYKYGP KLSFPSYQTW IDLTIITRLL LNSLISFSLS RPPTTKLQAS TIASSIKYRS  60
SSSSSSSSCL ASRLINLFRQ ELEVNRSRAG QLAFGGQIEL ATSMEHLQQQ QDDQSCCVPP  120
GFRFHPTEEE LVGYYLARKV ASQKIDLDII QEVDLYRIEP WDLQERCGRQ YGAGSGHEED  180
SFRSSSSSAE WYFFSFKDRK YPSGTRTNRA TAAGFWKATG RDKPVLRGGH GHGRGAVIGM  240
RKTLVFYRGR APNGRKTEWI MHEYRLQSSE HAPTPEEGWV VCRAFHKPLP NMHHHRPMPF  300
VFPGADHYAA AAGGPPPAGY YINDIDARLN GHGGDLLNYL HPAPVSGGGG GGFVFPGNGS  360
VHGQMIVSED LQVESKKHVN IFSSIPQLIE SPVTATIDDD DQAGAGQQAA GGIDWNFLDS  420
LLSSTSSASQ LIHDSSSQSQ LMMHLQQQH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-481072873168Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g27467.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ6934260.0JQ693426.1 Brachypodium distachyon SWN5 (SWN5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010240665.10.0protein SOMBRERO isoform X1
TrEMBLA0A0Q3EGN20.0A0A0Q3EGN2_BRADI; Uncharacterized protein
STRINGBRADI5G27467.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25943791
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36160.19e-74NAC domain containing protein 76
Publications ? help Back to Top
  1. Valdivia ER, et al.
    Regulation of secondary wall synthesis and cell death by NAC transcription factors in the monocot Brachypodium distachyon.
    J. Exp. Bot., 2013. 64(5): p. 1333-43
    [PMID:23386682]