PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G001300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GATA
Protein Properties Length: 150aa    MW: 16435.9 Da    PI: 10.1399
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G001300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.41.1e-192256135
                GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                        C+ C+ttkTplWR gp g+k+LCnaCG++yrk+++
  Brast01G001300.1.p 22 CTDCNTTKTPLWRGGPTGPKSLCNACGIRYRKRRR 56
                        ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011413.2571652IPR000679Zinc finger, GATA-type
SMARTSM004016.4E-181671IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.8E-161657IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.19E-131656No hitNo description
CDDcd002029.87E-162171No hitNo description
PROSITE patternPS0034402247IPR000679Zinc finger, GATA-type
PfamPF003201.9E-172256IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MEPDKVAADP DECTASGEPK ACTDCNTTKT PLWRGGPTGP KSLCNACGIR YRKRRRQAMG  60
LDPEVKKKPR KEDAAAATKA DAAGQEGNEK AKEKKEPRTH TVELHMVGFA KDVVLKQRRR  120
MRRRKPSCQG EEERAAILLM ALSSGVIYA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15155RKRRR
2116122QRRRMRR
3117124RRRMRRRK
4118123RRMRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G001300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0988582e-57FP098858.1 Phyllostachys edulis cDNA clone: bphylf052j14, full insert sequence.
GenBankFP1000032e-57FP100003.1 Phyllostachys edulis cDNA clone: bphyst005b14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565196.12e-75GATA transcription factor 16
TrEMBLI1HVV16e-74I1HVV1_BRADI; Uncharacterized protein
STRINGBRADI2G62660.11e-74(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24183892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.17e-24GATA transcription factor 16