PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast01G004200.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Dof

Protein Properties

Length: 350aa MW: 36614.1 Da PI: 8.8668

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast01G004200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	117.8	4.2e-37	106	166	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e l+cprCdstntkfCy+nnysl+qPr+fC+aCrryWt+GGalrnvPvGgg r++ k+s Brast01G004200.1.p 106 PEPGLNCPRCDSTNTKFCYFNNYSLTQPRHFCRACRRYWTRGGALRNVPVGGGYRRHAKRS 166 567899*************************************************988776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-35	90	162	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.6E-31	110	164	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.649	110	164	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	112	148	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MIFPPAFLDS SSCWNTNNHN NQLQQLANSS DHLTSSSPSA AAAAGGNGNG NSNNQLSHHQ 60 EGGGLQQVMA AGAGGGGGEE AASNNTSSSK AMSMSERARL ARVPQPEPGL NCPRCDSTNT 120 KFCYFNNYSL TQPRHFCRAC RRYWTRGGAL RNVPVGGGYR RHAKRSSNKP KSSSSTAAAA 180 SSSPAPAATT STRSTATPAP QSSSATLQSM FCNSSNGNMF DLGLSSSSSG FPFLQQDQQQ 240 QWAMQQSFPF LQAMDMGMGQ PMPPLPAATM QGMFHLGLHT GADDNHFGGG HHMAQLPPAP 300 GKRTPEQQQD YSAPISSRMH GGNGMYGDHH VVNGGGGYAF YSSSSAAGN*

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MIFPPAFLDS SSCWNTNNHN NQLQQLANSS DHLTSSSPSA AAAAGGNGNG NSNNQLSHHQ  60
EGGGLQQVMA AGAGGGGGEE AASNNTSSSK AMSMSERARL ARVPQPEPGL NCPRCDSTNT  120
KFCYFNNYSL TQPRHFCRAC RRYWTRGGAL RNVPVGGGYR RHAKRSSNKP KSSSSTAAAA  180
SSSPAPAATT STRSTATPAP QSSSATLQSM FCNSSNGNMF DLGLSSSSSG FPFLQQDQQQ  240
QWAMQQSFPF LQAMDMGMGQ PMPPLPAATM QGMFHLGLHT GADDNHFGGG HHMAQLPPAP  300
GKRTPEQQQD YSAPISSRMH GGNGMYGDHH VVNGGGGYAF YSSSSAAGN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast01G004200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM084362	4e-98	AM084362.1 Hordeum vulgare subsp. vulgare dof14 gene for dof zinc finger protein 14.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014753866.1	1e-148	dof zinc finger protein DOF3.2
TrEMBL	A0A0Q3GMU7	1e-147	A0A0Q3GMU7_BRADI; Uncharacterized protein
STRING	BRADI2G62380.1	1e-119	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.1	7e-41	OBF-binding protein 3

Link Out ? help Back to Top
Phytozome	Brast01G004200.1.p