PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G022200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GRAS
Protein Properties Length: 458aa    MW: 49200 Da    PI: 6.2971
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G022200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS406.92e-124514521374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l++lLl+cA a ++g l +a+a+L+++  la+pdgd+mqR+aa f+eALa+r +r +++l++al   + s+ + +e++aa++ f +++P+l
  Brast01G022200.1.p  51 LIHLLLNCAAAAAAGRLDAANAALEHIAALAAPDGDAMQRVAAAFAEALARRALRAWPGLCRALLLPRPSSPTPAEAAAARRHFLDLCPFL 141
                         689*************************************************************77777778999**************** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfd.isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181
                         +++  +aNqa+lea+e+e+ vH+iD++ +   +QW+ Ll+ La+Rpegpp++R+T+v++    +k+ l++t+  L+k Ae+l+vpf+fn++
  Brast01G022200.1.p 142 RLAGAAANQAVLEAMESEKIVHVIDLGgAADAAQWLELLRLLAARPEGPPHFRLTAVHE----HKDLLSQTAMALTKEAERLDVPFQFNPV 228
                         **************************64889****************************....9*************************** PP

                GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrll...................................desvsleserdevLklvkslsPk 237
                         +a rl++l++e+Lrvk+gEala++++lqlh ll                                    +++    + +++L ++++lsPk
  Brast01G022200.1.p 229 IAPRLDALDVESLRVKTGEALAISCSLQLHCLLatdedssaaaaagssseksaaaerrsspdssgllsPSTT----RLESFLGALWGLSPK 315
                         999*********************************************************965554322222....4667*********** PP

                GRAS 238 vvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvp 328
                         v+vv+eqea+hn++ + erf+eal+yy+alfd+le++++r s er+ vEr llg+ei+++vac ga+r+erhe++ +W +r+e+aGF +vp
  Brast01G022200.1.p 316 VMVVAEQEASHNTAGLTERFVEALNYYAALFDCLEVGAARGSVERARVERWLLGEEIRDIVACDGAARKERHERADRWAARMESAGFAAVP 406
                         ******************************************************************************************* PP

                GRAS 329 lsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                         ls++a  qa++  +  + dg++v ee+g+++l+W++rpL+svSaWr
  Brast01G022200.1.p 407 LSYYALLQARRAAQGLGCDGFKVREEKGTFFLCWQERPLFSVSAWR 452
                         *********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.57125432IPR005202Transcription factor GRAS
PfamPF035146.8E-12251452IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MIQQQDEGSS SSVTSSPLQN FSNMPLHTPA AAAAPPWTVR ELRSDERGLC LIHLLLNCAA  60
AAAAGRLDAA NAALEHIAAL AAPDGDAMQR VAAAFAEALA RRALRAWPGL CRALLLPRPS  120
SPTPAEAAAA RRHFLDLCPF LRLAGAAANQ AVLEAMESEK IVHVIDLGGA ADAAQWLELL  180
RLLAARPEGP PHFRLTAVHE HKDLLSQTAM ALTKEAERLD VPFQFNPVIA PRLDALDVES  240
LRVKTGEALA ISCSLQLHCL LATDEDSSAA AAAGSSSEKS AAAERRSSPD SSGLLSPSTT  300
RLESFLGALW GLSPKVMVVA EQEASHNTAG LTERFVEALN YYAALFDCLE VGAARGSVER  360
ARVERWLLGE EIRDIVACDG AARKERHERA DRWAARMESA GFAAVPLSYY ALLQARRAAQ  420
GLGCDGFKVR EEKGTFFLCW QERPLFSVSA WRGRRFD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A4e-57344541380Protein SCARECROW
5b3h_D4e-57344541380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G022200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165765.10.0scarecrow-like protein 3
SwissprotQ9LPR81e-164SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A3B6EPZ70.0A0A3B6EPZ7_WHEAT; Uncharacterized protein
STRINGSb03g045660.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.13e-51scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]