PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G023500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 212aa    MW: 23841.4 Da    PI: 5.1468
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G023500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM50.19.3e-16421697128
                 NAM   7 FhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWk.atgkdkevls 94 
                         F+Pt++elv ++L+++++g +l+++ +  +e+d +   PwdL +++   ++ + yfF++r+++   g   +r+++ g W   t  d +  +
  Brast01G023500.1.p  42 FEPTEDELVLHFLRPRLRGFELRVAGAvAEEADPCARAPWDLLARHGLlRRGHGYFFAPRRRR---GGAVRRSVAGGSWMhGTKGDGASAT 129
                         9********************99988846666**********854444244477*****9995...678999999****833444555544 PP

                 NAM  95 k.kgelvglkktLvfy.....kgrapkgektdWvmheyrl 128
                         + +  + + ++   fy      g     +++ Wvm ey++
  Brast01G023500.1.p 130 ElGVVVPWRRTRYCFYrlrggAGAGAARSSAGWVMLEYEI 169
                         43555567777899**6654434555556999******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100524.76436195IPR003441NAC domain
PfamPF023651.7E-1242169IPR003441NAC domain
SuperFamilySSF1019411.19E-2642195IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MEEGANLKGV LWREEDRAGA GEEEEEEEEE EEEEEEDSSE AFEPTEDELV LHFLRPRLRG  60
FELRVAGAVA EEADPCARAP WDLLARHGLL RRGHGYFFAP RRRRGGAVRR SVAGGSWMHG  120
TKGDGASATE LGVVVPWRRT RYCFYRLRGG AGAGAARSSA GWVMLEYEIT DPSCYRRAEE  180
GEEDEYWVLC HVRRSSRAPA ARRPPARRAH L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G023500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020201278.13e-72NAC domain-containing protein 48-like
TrEMBLA0A3B6H5X27e-71A0A3B6H5X2_WHEAT; Uncharacterized protein
TrEMBLA0A453GLV17e-71A0A453GLV1_AEGTS; Uncharacterized protein
STRINGLPERR01G38080.18e-70(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137612528