PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast01G030100.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

NF-YB

Protein Properties

Length: 123aa MW: 13345 Da PI: 10.3748

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast01G030100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	108	5.9e-34	1	79	17	95
NF-YB 17 mkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 mk +lPa+ak+sk ake +qec++ef++fvt+eas++c+re+rkt++gdd+++a+ +lG+++y++++ yl+++re+e+ Brast01G030100.1.p 1 MKGALPAEAKVSKRAKEAIQECATEFVAFVTGEASQRCRRERRKTVSGDDVCHAMRSLGLDHYAAAMARYLQRHREAEE 79 899*************************************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	6.0E-32	1	88	IPR009072	Histone-fold
Pfam	PF00808	3.8E-15	1	55	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	1.59E-24	1	92	IPR009072	Histone-fold
PRINTS	PR00615	4.3E-11	19	37	No hit	No description
PRINTS	PR00615	4.3E-11	38	56	No hit	No description
PRINTS	PR00615	4.3E-11	57	75	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 123 aa Download sequence Send to blast
MKGALPAEAK VSKRAKEAIQ ECATEFVAFV TGEASQRCRR ERRKTVSGDD VCHAMRSLGL 60 DHYAAAMARY LQRHREAEEL AAQINGRSGG FGQQIDVRAQ LSSVSSRSRA PGSSETKHLG 120 RN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	6e-28	1	76	17	92	Transcription factor HapC (Eurofung)
4g92_B	6e-28	1	76	17	92	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast01G030100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024315117.1	6e-62	nuclear transcription factor Y subunit B-4-like
Swissprot	O82248	4e-32	NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBL	I1HUZ2	1e-60	I1HUZ2_BRADI; Uncharacterized protein
STRING	BRADI2G60030.1	2e-61	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2917	38	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47810.1	3e-34	nuclear factor Y, subunit B5

Link Out ? help Back to Top
Phytozome	Brast01G030100.1.p

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]