PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G038400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 203aa    MW: 21779.8 Da    PI: 10.1058
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G038400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM94.51.7e-29131391128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk...sgyWkatgk 88 
                         lp GfrF Ptdeel v+yL++k+ + +l+  +vi+ +d+ +++P dLp    + + + +fFs+   +   g+r++ra++   +g+Wka+g 
  Brast01G038400.1.p  13 LPNGFRFMPTDEELTVHYLRRKALSFPLPN-NVIPVADLARIHPADLPGD--EAQGDKFFFSRPVPRC--GRRARRAAApgaAGVWKASGA 98 
                         699************************999.99***************33..3445789999988865..678888655456999****** PP

                 NAM  89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++ vl++ ++  v lk+ Lvf++ + +   +t+W mheyrl
  Brast01G038400.1.p  99 EELVLVSpRRVPVALKQKLVFFSVDGRGVARTRWAMHEYRL 139
                         **9999878888**********99999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.54E-385165IPR003441NAC domain
PROSITE profilePS5100538.30313165IPR003441NAC domain
PfamPF023651.9E-1814139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MAMPAAAGGP LGLPNGFRFM PTDEELTVHY LRRKALSFPL PNNVIPVADL ARIHPADLPG  60
DEAQGDKFFF SRPVPRCGRR ARRAAAPGAA GVWKASGAEE LVLVSPRRVP VALKQKLVFF  120
SVDGRGVART RWAMHEYRLH PDVLAAAHNA GRAVEDWVVC RVSHKATRAQ RRGGGGGNPP  180
SPVSSCVTGE MGDDDRDEEI SS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-281117115171NO APICAL MERISTEM PROTEIN
1ut4_B5e-281117115171NO APICAL MERISTEM PROTEIN
1ut7_A5e-281117115171NO APICAL MERISTEM PROTEIN
1ut7_B5e-281117115171NO APICAL MERISTEM PROTEIN
3swm_A7e-281117118174NAC domain-containing protein 19
3swm_B7e-281117118174NAC domain-containing protein 19
3swm_C7e-281117118174NAC domain-containing protein 19
3swm_D7e-281117118174NAC domain-containing protein 19
3swp_A7e-281117118174NAC domain-containing protein 19
3swp_B7e-281117118174NAC domain-containing protein 19
3swp_C7e-281117118174NAC domain-containing protein 19
3swp_D7e-281117118174NAC domain-containing protein 19
4dul_A5e-281117115171NAC domain-containing protein 19
4dul_B5e-281117115171NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G038400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003561060.11e-105NAC domain-containing protein 83
TrEMBLI1H0S91e-104I1H0S9_BRADI; Uncharacterized protein
STRINGBRADI1G48580.11e-105(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82333047
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.22e-26NAC domain containing protein 41