PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G038600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 204aa    MW: 21925.1 Da    PI: 9.3373
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G038600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM83.44.4e-26131401128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.tksgyWkatgkdk 90 
                         lp GfrF  +deel v+yL++k+ + +l+ +++i+ +d+ +++P dLp+   + + + +fFs+   +  +  r   a  ++g+Wka+g ++
  Brast01G038600.1.p  13 LPNGFRFMLNDEELTVHYLRNKALSFPLPNDNIIPIADVARIHPADLPRD--EAQGDKFFFSRPVPRCGRRARGAAApGAAGVWKASGAEE 101
                         699***************************999***************43..3445789**99998876655555532449********** PP

                 NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          vl++ ++ +v lk+ Lvf++ + +   +t+W mheyrl
  Brast01G038600.1.p 102 LVLVSpRRVAVALKQKLVFFSVDGRGVARTRWAMHEYRL 140
                         9999878889**********99999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-335166IPR003441NAC domain
PROSITE profilePS5100534.34213166IPR003441NAC domain
PfamPF023652.5E-1514140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MAMPAAAGGP LGLPNGFRFM LNDEELTVHY LRNKALSFPL PNDNIIPIAD VARIHPADLP  60
RDEAQGDKFF FSRPVPRCGR RARGAAAPGA AGVWKASGAE ELVLVSPRRV AVALKQKLVF  120
FSVDGRGVAR TRWAMHEYRL HPAVLAEAAN IGRAVEDWVV CRVFQKATRT QRRGGGGGNP  180
PSPVSSCMTE EIGDKDGDEE IAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-221117215171NO APICAL MERISTEM PROTEIN
1ut4_B8e-221117215171NO APICAL MERISTEM PROTEIN
1ut7_A8e-221117215171NO APICAL MERISTEM PROTEIN
1ut7_B8e-221117215171NO APICAL MERISTEM PROTEIN
3swm_A9e-221117218174NAC domain-containing protein 19
3swm_B9e-221117218174NAC domain-containing protein 19
3swm_C9e-221117218174NAC domain-containing protein 19
3swm_D9e-221117218174NAC domain-containing protein 19
3swp_A9e-221117218174NAC domain-containing protein 19
3swp_B9e-221117218174NAC domain-containing protein 19
3swp_C9e-221117218174NAC domain-containing protein 19
3swp_D9e-221117218174NAC domain-containing protein 19
4dul_A8e-221117215171NAC domain-containing protein 19
4dul_B8e-221117215171NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G038600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003561060.11e-101NAC domain-containing protein 83
TrEMBLI1H0S91e-100I1H0S9_BRADI; Uncharacterized protein
STRINGBRADI1G48580.11e-101(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82333047
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.14e-23NAC domain containing protein 83